Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g3337 ATGGAGCCTGGTGAGGAAATTTATGCAGAATGGAGTTCCCTTAGTGGATCATACACAGCTGAGGAAGCTGATTTCATGAACCAGTTTCTTAGCAACTGCTCACACACACAACAGCTACATGCAAATTGGAATGCAGGAATTCCATCTGCATTATGGTATGGTCATGCAGACATCAATAGCAGTTCATTTTATGCTGCAGATGCTTCTAACAATATGTTTCCAATTATAGATAGTGACAACTTGAATGATCCATTAACCAACTTGGTGGATCCCTCATTAAGCACATATACTGATAAAGAGTTAGGTGTAGATGTTATTGCTGATAAGAATGTACCAAGTGAACCAGTTTCTGAACCAGCCCAAGAGAATATAACCAGCAAGCTGGAGAAGCCAAGAAAAAGGTCTCGGAGTTCAAATGAGATACTAAAGAACAAGAAAAATGTTAAGACTACAAAGAAACCAAAATCTGCTTCCATTAGCAACATTAAAGAAGAAGATAGATGTCCTGGTCAGGGGGAAAACTTGAGCTGTTCCTGCTCAGAAGACGACTTGGACACGTGTCGTGAGCTAAATGAAGGAGAGTCTTCGAGCTTGAGCCTGAAATATTCTAAAGGTCTTCAGTTAAATGGAAAATCTAGATCTAGTAGAGGTTCTGCTACTGATCCACAGAGCATCTATGCAAGAAGAAGAAGAGAAAGAATAAATGAAAGGTTGAGAATCTTACAAAACTTAGTGCCTAATGGAACCAAGGTGGATATCAGCACAATGCTCGAGGAGGCTGTCCAATATGTGAAATTTTTACAGCTCCAAATTAAGCTCTTGAGCTCTGATGATCTCTGGATGTACGCTCCAATTGCTTACAATGGAATGAACATTGGACTAGACTTCAATATTACCACACCCAAATAG 909 0.3971 MEPGEEIYAEWSSLSGSYTAEEADFMNQFLSNCSHTQQLHANWNAGIPSALWYGHADINSSSFYAADASNNMFPIIDSDNLNDPLTNLVDPSLSTYTDKELGVDVIADKNVPSEPVSEPAQENITSKLEKPRKRSRSSNEILKNKKNVKTTKKPKSASISNIKEEDRCPGQGENLSCSCSEDDLDTCRELNEGESSSLSLKYSKGLQLNGKSRSSRGSATDPQSIYARRRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMNIGLDFNITTPK* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g3337 302 Pfam Helix-loop-helix DNA-binding domain 228 268 IPR011598 GO:0046983
Ahy19g3337 302 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 216 284 IPR036638 GO:0046983
Ahy19g3337 302 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 13 301 - -
Ahy19g3337 302 MobiDBLite consensus disorder prediction 108 175 - -
Ahy19g3337 302 MobiDBLite consensus disorder prediction 125 147 - -
Ahy19g3337 302 Gene3D - 216 275 IPR036638 GO:0046983
Ahy19g3337 302 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 218 267 IPR011598 GO:0046983
Ahy19g3337 302 SMART finulus 224 273 IPR011598 GO:0046983
Ahy19g3337 302 PANTHER TRANSCRIPTION FACTOR BHLH139-LIKE 13 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g3337 Ahy-Chr19 156358116 156359920 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g3337 6 298 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 39.655 3.56e-57 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy19g3337 HLH 6.30E-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g3337 - - ahf:112711907 508.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3337 19 156358116 156359920 Ahy19g3337 19 156358116 156359920 ECH
Ahy19g3337 19 156358116 156359920 Ahy9g2301 9 111903901 111905643 hybridization