Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g3336 ATGGAACCAGCTCAGTTGATTTCTGAAGAATGGGGTTCTCTTAGTGGACTATACACAGCTGAGGAAGCTGAATTCATGACTCAGCTTCTTGCTGGTAACTATTCTGTCTCAGAGAAGCATTATTCTAGTGTTGCCATGCCACCATCTTCTGCATTTTGGCCTTGCCATGAATCCACAAAAGTGAGCTTCAAAGGCATCAATGGCAATTCCTATTTGCCTCCTTCACATATTGAAAATGCTAACTATCTATGCTTCTCCCAAGGGAGTAGCTCCAGTACTGAGAATGGTAATATCTATTCCTATGATACCACAACAAATTTCGACTCCATGTCCACCGATAATTGTTTAGAAGGTGCCAAGTTTAGTCCACAGAGTAATGATAACTCGAGGGCGCAGATAAGTGGAATCATTGATGAAGATGCTAAGATAGAGTGTGAAAGAATGGTTTTTGAACCTGCAGAGGACTTGGAGAACCCAACCAAAAGGCTTAGGAGTTCATCTGAGGTCCCAAGAAACATGAGGAATGTTAAATCAAGGAAGGAGAATCCACTTCCTTCTTCTTACACAAGCAACAGTGAAGAGGATAAAGGCCCTGCAGCTCCCAAAAATAGAAGAAGTAGCAGTGGTGCTGCCACAGATCCACAGAGCCTATATGCAAGAAAAAGAAGAGAAAGGATAAATGAAAGGTTGAGAATACTACAAACACTTGTCCCCAATGGAACTAAGGTGGATATCAGCACCATGCTTGAGGAAGCTGTCCATTATGTGAAGTTCTTACAACTCCAAATTAAGCTTCTAAGCTCTGATGATTTATGGATGTATGCTCCAATTGCTTACAATGGAATTAACATTGGACTAGACCTCTCTATTACTCCTCCAACTAAAGCAAGCTGA 894 0.415 MEPAQLISEEWGSLSGLYTAEEAEFMTQLLAGNYSVSEKHYSSVAMPPSSAFWPCHESTKVSFKGINGNSYLPPSHIENANYLCFSQGSSSSTENGNIYSYDTTTNFDSMSTDNCLEGAKFSPQSNDNSRAQISGIIDEDAKIECERMVFEPAEDLENPTKRLRSSSEVPRNMRNVKSRKENPLPSSYTSNSEEDKGPAAPKNRRSSSGAATDPQSLYARKRRERINERLRILQTLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDLWMYAPIAYNGINIGLDLSITPPTKAS* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g3336 297 Pfam Helix-loop-helix DNA-binding domain 220 260 IPR011598 GO:0046983
Ahy19g3336 297 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 189 292 - -
Ahy19g3336 297 SMART finulus 216 265 IPR011598 GO:0046983
Ahy19g3336 297 CDD bHLH_AtIND_like 211 273 - -
Ahy19g3336 297 MobiDBLite consensus disorder prediction 154 221 - -
Ahy19g3336 297 PANTHER TRANSCRIPTION FACTOR BHLH54 7 206 - -
Ahy19g3336 297 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 210 275 IPR036638 GO:0046983
Ahy19g3336 297 Gene3D - 213 268 IPR036638 GO:0046983
Ahy19g3336 297 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 210 259 IPR011598 GO:0046983
Ahy19g3336 297 PANTHER TRANSCRIPTION FACTOR BHLH54 189 292 - -
Ahy19g3336 297 MobiDBLite consensus disorder prediction 179 196 - -
Ahy19g3336 297 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 206 - -
Ahy19g3336 297 MobiDBLite consensus disorder prediction 154 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g3336 Ahy-Chr19 156355137 156356369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g3336 189 286 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 81.000 9.76e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy19g3336 HLH 6.20E-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g3336 - - adu:107467178 583.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3336 19 156355137 156356369 Ahy9g2302 9 111907659 111908847 hybridization