Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g3332 ATGGCTTTGGAGGCTCTGAATTCTCCTACAGCTGCAGGAATCACTCCTTTCATTGCCAAGTTCCAAGATCAAGAAGAAGAAGAAGAAGAGCTTCATCAGCTGCGTGAGCCGTGGGCCAAGAGGAAGCGATCAAAACGACCGCGTTTCGAGAACCCTCCCACCGAAGAAGAGTACCTTGCTCTCTGCCTCATCATGTTAGCTCACAGCGGCAACAAGGTCACTGCCACTACTCTTAAGAACGAACAAACAGAGTCTTCATCTTCACAGCAACCACAAGAAGCCTCATCGTCGCCGTCGCCGTCGCCGCCGCCGCCTATCAAGCTTACTCACAGGTGCACCGTCTGTAACAAGGCCTTCCCTTCTTACCAAGCACTCGGCGGACACAAGGCCAGCCACCGCAAATCATCCAATTCTGAAAACAACACCACCGCCGCCGCCGCCGCCACAGTCAACAGCGAAAACGTGTCAGCCTCCGCCACCACGAACGGCGGGCCAAGGATGCACGAGTGTTCCATATGTCACAAGTCTTTCCCTACCGGTCAGGCTTTGGGTGGCCACAAGCGCTGCCACTACGAAGGTGGCAACAACAACCACAACAACAACAACAACAATAGCAGCGCCGTGGCATCTTCCGAGGGCGGCGGCGCCTCCTCCCAGAGCTTCCGTGGCTTTGACCTCAACCTGCCTGCTCCCCTGACCGAGTACTGGTCGCCGGCGGGGCTTGATGACGTCAGCGAAGCGAAGACAAAGAACAAGAAGAAGAAGGTTGAAGAGCAAGAAGTGGAAAGCCCTCTGCCGGTAGCCGCCGCGAAGAGGGCGCGTTTGTTTGAAGACGCTGATCAGAACTAA 849 0.5571 MALEALNSPTAAGITPFIAKFQDQEEEEEELHQLREPWAKRKRSKRPRFENPPTEEEYLALCLIMLAHSGNKVTATTLKNEQTESSSSQQPQEASSSPSPSPPPPIKLTHRCTVCNKAFPSYQALGGHKASHRKSSNSENNTTAAAAATVNSENVSASATTNGGPRMHECSICHKSFPTGQALGGHKRCHYEGGNNNHNNNNNNSSAVASSEGGGASSQSFRGFDLNLPAPLTEYWSPAGLDDVSEAKTKNKKKKVEEQEVESPLPVAAAKRARLFEDADQN* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g3332 282 MobiDBLite consensus disorder prediction 245 261 - -
Ahy19g3332 282 ProSiteProfiles Zinc finger C2H2 type domain profile. 168 190 IPR013087 -
Ahy19g3332 282 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 272 IPR044653 GO:0003700
Ahy19g3332 282 Pfam C2H2-type zinc finger 168 191 - -
Ahy19g3332 282 Pfam C2H2-type zinc finger 110 134 - -
Ahy19g3332 282 SUPERFAMILY beta-beta-alpha zinc fingers 110 190 IPR036236 -
Ahy19g3332 282 MobiDBLite consensus disorder prediction 79 109 - -
Ahy19g3332 282 MobiDBLite consensus disorder prediction 136 162 - -
Ahy19g3332 282 MobiDBLite consensus disorder prediction 79 95 - -
Ahy19g3332 282 MobiDBLite consensus disorder prediction 23 54 - -
Ahy19g3332 282 ProSitePatterns Zinc finger C2H2 type domain signature. 170 190 IPR013087 -
Ahy19g3332 282 MobiDBLite consensus disorder prediction 194 222 - -
Ahy19g3332 282 MobiDBLite consensus disorder prediction 236 265 - -
Ahy19g3332 282 MobiDBLite consensus disorder prediction 23 37 - -
Ahy19g3332 282 ProSitePatterns Zinc finger C2H2 type domain signature. 112 132 IPR013087 -
Ahy19g3332 282 Gene3D Classic Zinc Finger 108 190 - -
Ahy19g3332 282 PANTHER ZINC FINGER PROTEIN ZAT10 1 272 - -
Ahy19g3332 282 SMART c2h2final6 110 132 IPR013087 -
Ahy19g3332 282 SMART c2h2final6 168 190 IPR013087 -
Ahy19g3332 282 MobiDBLite consensus disorder prediction 126 162 - -
Ahy19g3332 282 ProSiteProfiles Zinc finger C2H2 type domain profile. 110 137 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g3332 Ahy-Chr19 156330987 156332458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g3332 1 244 C2H2 Transcription Factor Family AT1G27730 44.223 2.50e-48 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy19g3332 zf-C2H2_6 2.80E-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g3332 - - ahf:112775787 461.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3332 19 156330987 156332458 Ahy9g2306 9 111937074 111938517 hybridization