Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g3330 ATGAGCTGCAATGGATGCCGTGTGCTACGAAAAGGGTGCAGCGAAGAGTGCATGCTACGACATTGCCTGGTGTGGATACAGGACAATCCACCAGCACAGGGTTACGCCACCCTCTTCGTCGCCAAGTTCTTCGGCCGCGCCAACCTCATGTCTTTCCTTTCCTCCGTTCCCACCAACCACAGATCCGCATTGTTTCAGTCACTTCTATATGAGGCAGTGGGTCGTACCATAAATCCGGTGAGTGGGGCGGTGGGGCTGCTCTCGACAGGCAACTGGCATCTCTGCCAGTCCGCGGTGGACAAGGTGCTGCGAGGGGGCGGCGCCGCCTTGATGGAAAGTAGTGATCATTTGAAAGAAGCAGAATCACAAGAGAGAATTGAAAAGGGTCAACCACCCAGCAACACAACAACTACTCATCATTGGCCTTCTCAAACGACTGAAACCAAGCTGCTTACGCTTTTCTTATGA 468 0.5321 MSCNGCRVLRKGCSEECMLRHCLVWIQDNPPAQGYATLFVAKFFGRANLMSFLSSVPTNHRSALFQSLLYEAVGRTINPVSGAVGLLSTGNWHLCQSAVDKVLRGGGAALMESSDHLKEAESQERIEKGQPPSNTTTTHHWPSQTTETKLLTLFL* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g3330 155 MobiDBLite consensus disorder prediction 114 144 - -
Ahy19g3330 155 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 126 - -
Ahy19g3330 155 MobiDBLite consensus disorder prediction 127 144 - -
Ahy19g3330 155 Pfam Lateral organ boundaries (LOB) domain 2 100 IPR004883 -
Ahy19g3330 155 PANTHER LOB DOMAIN PROTEIN 1 126 - -
Ahy19g3330 155 ProSiteProfiles LOB domain profile. 1 108 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g3330 Ahy-Chr19 156313470 156314255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g3330 1 106 AS2 family AT3G49940 73.585 6.00e-53 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ahy19g3330 LOB 1.50E-24 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3330 19 156313470 156314255 Ahy19g3330 19 156313470 156314255 ECH
Ahy17g3235 17 134446241 134447330 Ahy19g3330 19 156313470 156314255 ECH
Ahy19g3330 19 156313470 156314255 Ahy9g2308 9 111956678 111957387 hybridization
Ahy5g0569 5 7152919 7154331 Ahy19g3330 19 156313470 156314255 PCT