Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g3321 ATGACGAGCGCTTCGGAGCTATTCCACAGCAGGAGGCATCGTTTGGGACGATACAATAACAATACCTCCCTCCCTCTAGGGCTTGACTCCGACCATGTTCCCGACCTCCACCATCCTCGCCGCCTTTCTCGCCGCCTCCCTCACTCTCCCTCTTCCTCCGAGCGTGCAGCAGTAGCTGATAGATTCGAGAGGAGGTATCGCCGGTCGCTGTTGAATGCGGAAAGCGTGAGAGACGCGTTTGCTCCTCCAAGATTGAATCCCTCCGATAGACTTCCTGTCGGTGTCTTACTTGCACGCGCCAGGCTCGTTGAGAGACTCAGAGGAGACCCTCTCTCGCCTAACAGGCATTCAATAGGCAGGGATCAAGAAAGTGATGATGTTGTTGTTTCTGACTTGACTTCTCAAATGGGAAGGTCCCATCTATTGCAAGAGAAACCACCTGGACTCTCTCAGGAAGCCCTAGAGTCTTTACATGTTGAAGTTTTTAGCAGCAGGGATACAGGTGAGGATTGTAGCATATGCTTGGAATCTTTTGTGGATGGGGATCAGCTCATATGTTTGCCATGTCACCATAGATTTCACTCTGCTTGTTTGGATCCTTGGGTTCGCTGTTGCGGAGACTGTCCCTACTGTCGACGACATATACTTGTAAATAAATAA 660 0.5045 MTSASELFHSRRHRLGRYNNNTSLPLGLDSDHVPDLHHPRRLSRRLPHSPSSSERAAVADRFERRYRRSLLNAESVRDAFAPPRLNPSDRLPVGVLLARARLVERLRGDPLSPNRHSIGRDQESDDVVVSDLTSQMGRSHLLQEKPPGLSQEALESLHVEVFSSRDTGEDCSICLESFVDGDQLICLPCHHRFHSACLDPWVRCCGDCPYCRRHILVNK* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g3321 219 CDD RING-H2_PA-TM-RING 170 212 - -
Ahy19g3321 219 Pfam Ring finger domain 170 212 IPR001841 -
Ahy19g3321 219 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHY1A-RELATED 1 124 - -
Ahy19g3321 219 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHY1A-RELATED 119 217 - -
Ahy19g3321 219 PANTHER SI:CH211-59O9.10 1 124 - -
Ahy19g3321 219 PANTHER SI:CH211-59O9.10 119 217 - -
Ahy19g3321 219 ProSiteProfiles Zinc finger RING-type profile. 171 212 IPR001841 -
Ahy19g3321 219 SMART ring_2 171 211 IPR001841 -
Ahy19g3321 219 MobiDBLite consensus disorder prediction 18 59 - -
Ahy19g3321 219 SUPERFAMILY RING/U-box 158 217 - -
Ahy19g3321 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 216 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g3321 Ahy-Chr19 156253927 156255224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g3321 85 215 C3H Transcription Factor Family AT1G49850 46.207 8.02e-33 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g3321 - - aip:107619305 414.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3321 19 156253927 156255224 Ahy9g2317 9 112032342 112033597 hybridization