Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g3310 ATGCAGGGCGAACTAGAAGAATTTACAAGCCCCAACAAAAGTGCCTCTAGAAAGATGCAAACACCGGATGCTGGAACAGAACAATGTCATTTGTCAGAGAAAACATCTCAGGTGGGTTCCGAATGTTTAGACAACAAGCAAGGTGTGCCTGGCAATGTGTTAGGCAGTTCTCTTATTGATGACCAAGCTTCTGAGAAAATGGCCAAGAGTTCTGAGTGTTTGGACAACAAGCAGAGCATGCCTAGTGATGTGTTAACAAGCTCCATGATTGATGAAAACTCAAACCGTGTGGCCGAGAATTCTGAGCTTTTGGACGACAAGCAAAGCATGCATAGTGATGTGTTAACCGATTCCGTGATTGATGAAAAATCAAACCAAGTTTCTGAAAAAATGACTGATGGTACGCAGTGTTTGGGCAACAAGAAAAACTTGCAAGGTGAAGTGTTAACCAATTGTGTAGTTGATGAAAAATCAAATGAGGTCTCTGAAAAAATGATCGAGGGTCCTGAGCATTTGGCCAGCAGGCAAAGCATGCATAGCGATGATGCATTGACCAATTCTGTGATTGATGAAAAATCAAACCAAGTTTCTGATAAAATGTTTGAGTGTCTTGAGCATTTGGCCAACAAGCAAAGCATGCATGGTGCTGTGTTAACCAAATCTGTGATTGATGAAAAGTTAAATCAAGTTTCTGACAAAATGACTGAGAGTCCAGAGTGTTTGGACAACAGGCAAAGCCTGCATGGTGATGTGCTAACCAATTCTGTGATTGATGAAAAAACAAACCAAGTATATGAAAAAATGACTGAGAGTCCTGAGCGTTTGGACAAGAAGCAAGGCATGCATGGCGATGTGTTAATCAATTCTGTGATTCGTGAAAACTCAAACCATGTTTCTCGCAAAATGACCGAGAGTTCTCAGTGTTTGGACAACAAGCAAAGTGTAATTGACGAGGTGTTAACCAGTCATGTGATTGATGAAAAATCGAACCAAGTTTCAGACAAAATGACAGAGAGTTCTCAGTGTTTACACAATGCACAAAGCATGCCAAGCAATGTGTTAACCAGCTCTGTTATTGATGAAAACTCAAACCAAGTTTCTGGAAAAATTATTAGGGGTGCTGTTATTGCACTGCCTGCACAACGCCAGCGTGATTTGAAAAAGAGTTGTCAAACTGCAGAAGGTTCATGCTCTCAACGGAGTACCTCAGAACAAGACCCCTCTCATTTGTCTAATGACAAATCAGAGATCAAATGTCAGCCTTTTTCTCAGAATGGCCAAAATGTGTCCGTGGAAATAAATAATCCTGTAACTGGTTCTCTTGTTGAGAACCAAACGCTATCTGTTCCAACACAAGTGAACACCACTTCTGCAAATGGACTACAGGATCCAGCTCCAGCATCTGTAGATGTGAAAAATACTGGTTTGAATTGTTCAAAAAGAAAATCTACAGCCACAACATCTATGCAGTTGAGCTGCAAGGGTAAAAAAAGCTCAAAATTATTAAAGAAGAAGTATATGCTAAGGTCATTAGGAAGCAGTGATAGAGCTTTGCGATCAAGGACACGCGAAAAACCTAAACCACCTGAGTCAAATAGCAATTTGGTTGATGCTAATAATGATGGCGTGAAGAATAAAAGGGGGAAGAAGAAGAACAAAAAGAGAGACGGGGAAGGAGTTATTGATGAATTTTCTAGAATAAGAGCTCGCTTAAGATATTTATTGAAACGAGTTAGCTATGAGCAGAACTTGATTGATGCTTATTCTAGTGAGGGCTGGAAAGGATACAGTTTGGAAAAGTTAAAGCCTGAAAAGGAGCTTCAACGGGCTAAGACTGAAATACTTCGACGTAAATTGAAAATGAGGGATCTCTTTCGATATTTGGATTCATTGTGTGCTGAAGGAAGGCTTCCTGAATCTGTGTTTGATTCTGAAGGAGAGATTGACAGTGAGGATATATTCTGTGCAAAATGTAGTTCCAAAGAGTTGAGCACAAACAATGATATAATTCTCTGTGACGGTGCTTGTGAACGTGGATTTCACCAGCTTTGTGTGGATCCTCCTTTGTTAACTGAAAACATTCCACCTGGCGATGAGGGTTGGCTATGCCCGGGATGTGATTGCAAAGATGACTGTATTGAAATTGTTAATGACTCCTTAGGAACACGTCTCTCTCTTGAGGATAGCTGGGAGAGGGTTTTTCCAGAAGCAGCTGCAGTTGATGCATTCAATGTGGATCACAACTCAGGACTTCCTTCTGATGATTCTGATGATGATGATTATGATCCTGATGTTAAAGAAGATGTGGAGGCTGAAGGGGGTGAATCAAGTTCTGATGAATCTGAGTATGCTTCTGCTTCTGAGAAATTGGAGGATTCAGGCCATGAGGATCAGTACATGGGCCTTCCTTCTGAAGATTCTGAGGATGATGATTATAATCCTGATGCTCCAGATCAAGACATGAAAGTTGCAGAGGAAAGTTCGAGCTCTGATTTCACATCTGATTCTGAGGATCTTGCTGCTACAATTAATGATAATATGCCCCCAGGACACGGTGAAGATATCACATCTGCATCATTGGATGATGCAAAGAAGTTTAAAGGATCCAGCAAAACAAGTAAAGTCGGTAAGAAGCCATCTATAACTGATGAATTGTCATCTTTACTAGAGGCAGATCCTGGCCAAGAGAGTTACACTCCTGTTTCGGGGAAAAGAAATGTGGAAAGGTTGGACTACAAAAAGCTGTATGATGAGACATACAAAAGTGATACTAGTGATGATGATGAAGACTGGAATGCTACTGCTACCCCAACTAGGAAGAAGAATGTCACTGGTAAATTGACTCCAGTGCCACCAAATAGAAAAGCCTCAAATAATTCTACACATACTCTGAGAAGTGACGGTAAAGCTGAAAAAACAAATAACTCAGCTGCTAAATCACTTGAAGGCTCTGGAAAATCAGGTTCCGGGGAGAAAAAACCAAGATCTTCAACATACAACAGACTTGGAGATGTTGCAATTGAGAGACTTTACAAATCTTTCAAAGAGAATCAGTATCCAGATCGGACCACAAAAGAAAGCTTGGCACAAGAAACAGGACTCACACTTCAGCAGGTAAGTAAATGGTTTGACAACACCCGATGGAGCTTTAGGCATTCATCCCATAAGGAACCCAGGACAGGTGAAAATGCTTTGGCGCAGACCACTGATAACATATCTGAAAATGAGGTGGCACCTGGTGGAGAGAACAGGGACAGTGAATTATTCCCCCAAGATGTCACCGGAGAAAACTCAAAAACCCCAAGCTCTAAGAAGAGGAAGGGTATGTCTGAACCCCTGGCATCTGAGTCTCCTCAGAATGCTGATAAAGCATCAAGTCATAAAATGAAGACAAGGAAAAGAAAATGA 3408 0.4108 MQGELEEFTSPNKSASRKMQTPDAGTEQCHLSEKTSQVGSECLDNKQGVPGNVLGSSLIDDQASEKMAKSSECLDNKQSMPSDVLTSSMIDENSNRVAENSELLDDKQSMHSDVLTDSVIDEKSNQVSEKMTDGTQCLGNKKNLQGEVLTNCVVDEKSNEVSEKMIEGPEHLASRQSMHSDDALTNSVIDEKSNQVSDKMFECLEHLANKQSMHGAVLTKSVIDEKLNQVSDKMTESPECLDNRQSLHGDVLTNSVIDEKTNQVYEKMTESPERLDKKQGMHGDVLINSVIRENSNHVSRKMTESSQCLDNKQSVIDEVLTSHVIDEKSNQVSDKMTESSQCLHNAQSMPSNVLTSSVIDENSNQVSGKIIRGAVIALPAQRQRDLKKSCQTAEGSCSQRSTSEQDPSHLSNDKSEIKCQPFSQNGQNVSVEINNPVTGSLVENQTLSVPTQVNTTSANGLQDPAPASVDVKNTGLNCSKRKSTATTSMQLSCKGKKSSKLLKKKYMLRSLGSSDRALRSRTREKPKPPESNSNLVDANNDGVKNKRGKKKNKKRDGEGVIDEFSRIRARLRYLLKRVSYEQNLIDAYSSEGWKGYSLEKLKPEKELQRAKTEILRRKLKMRDLFRYLDSLCAEGRLPESVFDSEGEIDSEDIFCAKCSSKELSTNNDIILCDGACERGFHQLCVDPPLLTENIPPGDEGWLCPGCDCKDDCIEIVNDSLGTRLSLEDSWERVFPEAAAVDAFNVDHNSGLPSDDSDDDDYDPDVKEDVEAEGGESSSDESEYASASEKLEDSGHEDQYMGLPSEDSEDDDYNPDAPDQDMKVAEESSSSDFTSDSEDLAATINDNMPPGHGEDITSASLDDAKKFKGSSKTSKVGKKPSITDELSSLLEADPGQESYTPVSGKRNVERLDYKKLYDETYKSDTSDDDEDWNATATPTRKKNVTGKLTPVPPNRKASNNSTHTLRSDGKAEKTNNSAAKSLEGSGKSGSGEKKPRSSTYNRLGDVAIERLYKSFKENQYPDRTTKESLAQETGLTLQQVSKWFDNTRWSFRHSSHKEPRTGENALAQTTDNISENEVAPGGENRDSELFPQDVTGENSKTPSSKKRKGMSEPLASESPQNADKASSHKMKTRKRK* 1136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g3310 1135 MobiDBLite consensus disorder prediction 454 475 - -
Ahy19g3310 1135 MobiDBLite consensus disorder prediction 951 983 - -
Ahy19g3310 1135 SUPERFAMILY Homeodomain-like 991 1055 IPR009057 -
Ahy19g3310 1135 MobiDBLite consensus disorder prediction 753 777 - -
Ahy19g3310 1135 SUPERFAMILY FYVE/PHD zinc finger 644 712 IPR011011 -
Ahy19g3310 1135 Pfam PHD-finger 654 709 IPR019787 -
Ahy19g3310 1135 Pfam Homeodomain 1006 1049 IPR001356 GO:0003677
Ahy19g3310 1135 MobiDBLite consensus disorder prediction 1 43 - -
Ahy19g3310 1135 SMART HOX_1 991 1057 IPR001356 GO:0003677
Ahy19g3310 1135 CDD homeodomain 992 1054 IPR001356 GO:0003677
Ahy19g3310 1135 MobiDBLite consensus disorder prediction 782 802 - -
Ahy19g3310 1135 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 430 1107 - -
Ahy19g3310 1135 MobiDBLite consensus disorder prediction 1 82 - -
Ahy19g3310 1135 ProSitePatterns Zinc finger PHD-type signature. 655 706 IPR019786 -
Ahy19g3310 1135 CDD PHD_PRHA_like 654 706 IPR045876 -
Ahy19g3310 1135 ProSiteProfiles Zinc finger PHD-type profile. 652 709 IPR019787 -
Ahy19g3310 1135 SMART PHD_3 654 707 IPR001965 -
Ahy19g3310 1135 MobiDBLite consensus disorder prediction 392 406 - -
Ahy19g3310 1135 PANTHER HOMEOBOX PROTEIN HAT3.1 430 1107 - -
Ahy19g3310 1135 MobiDBLite consensus disorder prediction 826 841 - -
Ahy19g3310 1135 ProSiteProfiles 'Homeobox' domain profile. 993 1053 IPR001356 GO:0003677
Ahy19g3310 1135 Gene3D - 996 1064 - -
Ahy19g3310 1135 MobiDBLite consensus disorder prediction 1023 1047 - -
Ahy19g3310 1135 MobiDBLite consensus disorder prediction 392 423 - -
Ahy19g3310 1135 MobiDBLite consensus disorder prediction 1008 1022 - -
Ahy19g3310 1135 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 647 703 IPR013083 -
Ahy19g3310 1135 MobiDBLite consensus disorder prediction 516 530 - -
Ahy19g3310 1135 MobiDBLite consensus disorder prediction 512 558 - -
Ahy19g3310 1135 MobiDBLite consensus disorder prediction 1060 1076 - -
Ahy19g3310 1135 MobiDBLite consensus disorder prediction 745 1135 - -
Ahy19g3310 1135 MobiDBLite consensus disorder prediction 906 935 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g3310 Ahy-Chr19 156152829 156160033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g3310 458 1050 Homeobox Transcription Factor Family AT3G19510 44.375 1.55e-128 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Ahy19g3310 PHD 2.70E-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g3310 - - aip:107617775 1882.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3310 19 156152829 156160033 Ahy19g3310 19 156152829 156160033 ECH
Ahy19g3310 19 156152829 156160033 Ahy9g2330 9 112131645 112138291 hybridization