Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g3218 ATGGAGAAACTTTCCTTGTCTTCCATGTGCTCTTGGACATGTCATTTAGATAGTTACTTAGTTTCATCACTCAGATATTTTACTATAAATAGGTTAAGTTCTACCTTGGTCAGCAACACCTACATTTACTGTTTAGCTATTTTAAGTGAAGCAGATATCATCACTATGGATTCAAACACATCAAGCTTTCTTTTGAACTCCTCAACTTTTCACTCAGTTTTCTACCAAGACAAACAGAGTGATGACATCATTGATCTTGGTCTTAGCCTCAAAACTGTTCAACATGAGGCTTCTCATTCTTCTGCCAACTTGTATGATGATGATATTATGGATTGGCCTCACTCTAATCTCAACCTGAAGAACTCAAGCAAGAACTTTGATGAAGAGATAGAGGGGGTCCAGAGCAATGAGAGATGGGCCTATGTGAAGGTGAATATGGATAGGGTTACAATTGGTAGGAAAATTTGCATACTTGATCATGGAGGATACTCAAGTCTAGCTATCCAATTAGAAGACATGTTTGGAAGCCAAAGCCTCTCAGGTCTAAGATTGTTCCAACCTGATTCAGAGTACTCATTATTCTACAAAGACAGAGAAGATAATTGGAGGAGTGTAGGTGATGTGCCATGGAAAGAGTTTGTAGAATGTGTGAAGAGATTAAGGATTGCAAAAAGGAATGCAGGCCTTGCTTCCTGTTCATCTGGATACATCTAA 714 0.3852 MEKLSLSSMCSWTCHLDSYLVSSLRYFTINRLSSTLVSNTYIYCLAILSEADIITMDSNTSSFLLNSSTFHSVFYQDKQSDDIIDLGLSLKTVQHEASHSSANLYDDDIMDWPHSNLNLKNSSKNFDEEIEGVQSNERWAYVKVNMDRVTIGRKICILDHGGYSSLAIQLEDMFGSQSLSGLRLFQPDSEYSLFYKDREDNWRSVGDVPWKEFVECVKRLRIAKRNAGLASCSSGYI* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g3218 237 Pfam AUX/IAA family 116 225 IPR033389 -
Ahy19g3218 237 ProSiteProfiles PB1 domain profile. 139 227 IPR000270 GO:0005515
Ahy19g3218 237 Gene3D - 133 234 - -
Ahy19g3218 237 SUPERFAMILY CAD & PB1 domains 139 224 - -
Ahy19g3218 237 PANTHER AUXIN-RESPONSIVE PROTEIN IAA34 56 227 - -
Ahy19g3218 237 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 56 227 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g3218 Ahy-Chr19 155317641 155320202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g3218 134 222 B3 DNA Binding Superfamily AT1G19220 36.667 2.60e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Ahy19g3218 AUX_IAA 6.50E-21 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g3218 K14484 - gmx:100777024 303.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3218 19 155317641 155320202 Ahy19g3218 19 155317641 155320202 ECH
Ahy19g3218 19 155317641 155320202 Ahy9g2419 9 113088742 113091509 hybridization