Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g3123 ATGTTTCAGGAGACCACCGCCGTGGCCACTCGGTGGGGGACTGAGGCGGTGGAGGTGCGGATGAATCACTGGACTAGGGAGCAGGATAAGGTCTTCGAGAGAGCCTTGCTTTTCGTGCCGGAGGACTTACCGGACCGCTGGGATAAGATCGCCGAGCAGGTTCCCGGCAAGTCAGCCGTCGAAGTCAGGGACCGCTACGAGGCTTTGGTCCGCGACGTCTACGAAATCGACTCGGGCCGAGTCGAGGTGCCGAGGTACTCGGATGACTCGGCGGGTAGTGGCGGCGGTGGTGGAGGGTTGTCTTCTTGGGACTCAGCTAATCAGATCTCGTTCGGGTCAAAACCCAGGAATAGCGACAACGAGAGGAAGAAAGGTACTCCTTGGACGGAAGAGGAACACAGGTTGTTTTTGATTGGGCTAAAAAAATTTGGAAAGGGAGATTGGAGAAGCATTTCAAGGAATGTGGTTGTTACAAGAACACCTACTCAAGTAGCTAGCCATGCCCAAAAGTACTTTCTACGCCAGAATTCGGGGAAGAAAGAGAGGAAGAGATCAAGCATCCATGATATAACCACGGTGGATAGCAACTCTGTGCCTGTGCCTGTTGATCAGAATTGGGTTGCTCCTCCACAGCAAGAGATGCAGCAACACCAACAGCACCAGCACTTTAATCCGCACAATCATGTGGGTGCTGGTGGGTTTGGGTATTCAAACTACGGTGGCTTTTGA 729 0.5309 MFQETTAVATRWGTEAVEVRMNHWTREQDKVFERALLFVPEDLPDRWDKIAEQVPGKSAVEVRDRYEALVRDVYEIDSGRVEVPRYSDDSAGSGGGGGGLSSWDSANQISFGSKPRNSDNERKKGTPWTEEEHRLFLIGLKKFGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSGKKERKRSSIHDITTVDSNSVPVPVDQNWVAPPQQEMQQHQQHQHFNPHNHVGAGGFGYSNYGGF* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g3123 242 Gene3D - 126 177 - -
Ahy19g3123 242 SMART sant 20 72 IPR001005 -
Ahy19g3123 242 SMART sant 124 174 IPR001005 -
Ahy19g3123 242 SUPERFAMILY Homeodomain-like 122 176 IPR009057 -
Ahy19g3123 242 MobiDBLite consensus disorder prediction 84 127 - -
Ahy19g3123 242 Gene3D - 18 83 - -
Ahy19g3123 242 CDD SANT 127 172 IPR001005 -
Ahy19g3123 242 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 123 175 IPR006447 GO:0003677
Ahy19g3123 242 CDD SANT 24 70 IPR001005 -
Ahy19g3123 242 SUPERFAMILY Homeodomain-like 22 78 IPR009057 -
Ahy19g3123 242 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 20 229 IPR043363 -
Ahy19g3123 242 ProSiteProfiles SANT domain profile. 123 176 IPR017884 -
Ahy19g3123 242 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 120 176 IPR017930 -
Ahy19g3123 242 ProSiteProfiles Myb-like domain profile. 120 172 IPR001005 -
Ahy19g3123 242 MobiDBLite consensus disorder prediction 100 115 - -
Ahy19g3123 242 ProSiteProfiles Myb-like domain profile. 16 70 IPR001005 -
Ahy19g3123 242 Pfam Myb-like DNA-binding domain 127 172 IPR001005 -
Ahy19g3123 242 Pfam Myb-like DNA-binding domain 22 66 IPR001005 -
Ahy19g3123 242 PANTHER SYRINGOLIDE-INDUCED PROTEIN 1-3-1B 20 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g3123 Ahy-Chr19 154080411 154081934 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ahy19g3123 Myb_DNA-binding 1.50E-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g3123 - - adu:107467340 421.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3123 19 154080411 154081934 Ahy9g2503 9 114163823 114165436 hybridization