Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g3116 ATGGGATCGGAAAGCGTGGTTCCGAAATGGGCTTCTCAGCCTTGCATTATGGGAATCGACGAAGCCGGTAGAGGCCCGGTTTTGGGTCCCATGGTCTATGGTTGCTTATACTGCTCTCGCTCCTACCAGAACACTCTCTCCTCTCTCAGTTTTGCAGATTCCAAAACCCTCAAAGAAGACAAGAGGGAAGAACTCTTTGAAGCTCTCAAATCCAATGACTCTCTTGCTTGGGCCGTTGACGTCATCGATCCCAGGGACCTCTCCGCTAAAATGCTCCAGAAGAACAAGATTAACTTGAATGAGATTTCACATGATTCTGCTATGGGACTCATTCATAGGGTTCTCAAATTGGGAGTGCTCTTAACCGAGGTTTATATAGATACAGTTGGAGATCCAGGGAAATACGAAGTGAAGCTATCTAAAGTTTTTCCGTCTATCAAATTTGTGGTTGCAAAGAAGGCTGATAGTCTTTATCCTGTTGTTAGTGGTGCAAGCATTGTTGCAAAGGTCACAAGGGACAGGGCTTTAAGAGATTGGGTTCTTGATGAGAGTGTTGAAAACATGCACAGAAACTTTGGCTCTGGATATCCTGGAGATCCCCAAACCAAGTCTTGGCTAGAAGATCACAAGCATCCGATCTTTGGATTTCCGACATTGGTCCGGTTTAGTTGGGGAACCTGCAATACCTATTTTAAAGGTGGTGCGGAGGTCTTATGGGAGTCTGACAACGATGAAGATGGTGGCAACAATAATAGCAATGGCAAGCGGCAGTTGAAGCTAAGCAACGTGGGTTTCACCACATCCAAGAGGAGAAGCGAAGAAATAGAATCAAGTGGTAAAGGACGCTGTAGATTTTTCCAGTCCAGGAAACTTGAGCAACTCACTTATTTCCAAAAATAA 900 0.4489 MGSESVVPKWASQPCIMGIDEAGRGPVLGPMVYGCLYCSRSYQNTLSSLSFADSKTLKEDKREELFEALKSNDSLAWAVDVIDPRDLSAKMLQKNKINLNEISHDSAMGLIHRVLKLGVLLTEVYIDTVGDPGKYEVKLSKVFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRALRDWVLDESVENMHRNFGSGYPGDPQTKSWLEDHKHPIFGFPTLVRFSWGTCNTYFKGGAEVLWESDNDEDGGNNNSNGKRQLKLSNVGFTTSKRRSEEIESSGKGRCRFFQSRKLEQLTYFQK* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g3116 299 ProSiteProfiles Ribonuclease (RNase) H type-2 domain profile. 14 236 IPR024567 GO:0004523
Ahy19g3116 299 Pfam Ribonuclease HII 17 227 IPR024567 GO:0004523
Ahy19g3116 299 MobiDBLite consensus disorder prediction 244 263 - -
Ahy19g3116 299 Gene3D Ribonuclease hii. Domain 2 187 236 IPR023160 GO:0004523
Ahy19g3116 299 MobiDBLite consensus disorder prediction 242 263 - -
Ahy19g3116 299 PANTHER RIBONUCLEASE H2 SUBUNIT A 5 297 IPR001352 GO:0003723|GO:0004523
Ahy19g3116 299 TIGRFAM TIGR00729: ribonuclease HII 16 229 IPR004649 GO:0004523|GO:0016070
Ahy19g3116 299 Gene3D - 2 186 IPR036397 GO:0003676
Ahy19g3116 299 PANTHER RIBONUCLEASE 5 297 - -
Ahy19g3116 299 CDD RNase_HII_eukaryota_like 17 236 - -
Ahy19g3116 299 SUPERFAMILY Ribonuclease H-like 15 231 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g3116 Ahy-Chr19 154019252 154021530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g3116 1 297 Core DNA Replication Machinery Family AT2G25100 67.003 6.13e-151 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g3116 K10743 - gmx:100779875 511.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3116 19 154019252 154021530 Ahy19g3116 19 154019252 154021530 ECH
Ahy19g3116 19 154019252 154021530 Ahy9g2510 9 114236212 114238506 hybridization