Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g3088 ATGGCAACTTGTGGAAGAGAAGGAGCGGTGAGACAGTACATAAGATCCAAGGTTCCTCGTTTGAGATGGACTCCTGAGCTTCATCGATGCTTTGTTCATGCCATTGATAGCCTTGGAGGTCATCACAAGGCTACCCCTAAGCTTGTTCTTCAGTTGATGGACGTTAAAGGCCTCACAATTTCACACGTCAAGAGCCATCTTCAGATGTACAGAAGCATGAGGGGTGACTTGGGAAGACAAGGTAGGATTTCATCAAGCCAACATAGGAACCAATCTTTTGAGGAACATGATGATGGATGTGTTGAAGAAGTGAATGATGTTAATAATAATAATAATAATCATAATCAAAACTATCATCCATGTTCACAATCCATTGGAAAAGAATCCGATTCTCTCTTCGGATACAGTAACTTCTCCCCAAAAAGGGCTAGAATAGAGAGAAACTATTCCATATCTCAGAACCTGCAATGCAGGAACCAAAGAACAGTGCCATATCCGTACTCCTTTTATGATTATGCTTATTCAACTCAACAACAACAACATCAACCACCTCATTCCACAGTTTTCCCTATGCTGCCACCACTTCTTGGAAATTTCCTCCAGGTTACTAAATTAAATGATAGAGAGACCACTTCGGAGGCAATGACTAATAATAATAATAATAATAATGTACTTTTGAACATCAACAAAAACAACAACACTGAAAAGAAGGCACGTGCAGAAGAAGATGAAGATGAAGATGTAGGGAGAGAGTGTGAGTTGTCATTGTCTCTCACATTGCCAAATCCTTCACCCCAGAGAAGTAGTAATGTTTCTTCAGCCAGTGAGATCACTGAGGCTGCTATCTCTTCATCATGTTCCACTACTCTCAAACATAGGATTAATTTAGACTTGTCTCTATCCCTTTGTTGA 912 0.4002 MATCGREGAVRQYIRSKVPRLRWTPELHRCFVHAIDSLGGHHKATPKLVLQLMDVKGLTISHVKSHLQMYRSMRGDLGRQGRISSSQHRNQSFEEHDDGCVEEVNDVNNNNNNHNQNYHPCSQSIGKESDSLFGYSNFSPKRARIERNYSISQNLQCRNQRTVPYPYSFYDYAYSTQQQQHQPPHSTVFPMLPPLLGNFLQVTKLNDRETTSEAMTNNNNNNNVLLNINKNNNTEKKARAEEDEDEDVGRECELSLSLTLPNPSPQRSSNVSSASEITEAAISSSCSTTLKHRINLDLSLSLC* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g3088 303 MobiDBLite consensus disorder prediction 229 250 - -
Ahy19g3088 303 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 175 303 - -
Ahy19g3088 303 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 2 182 - -
Ahy19g3088 303 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 19 72 IPR006447 GO:0003677
Ahy19g3088 303 Gene3D - 18 74 - -
Ahy19g3088 303 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 175 303 IPR044848 GO:0003700
Ahy19g3088 303 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 2 182 IPR044848 GO:0003700
Ahy19g3088 303 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
Ahy19g3088 303 SUPERFAMILY Homeodomain-like 17 72 IPR009057 -
Ahy19g3088 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Ahy19g3088 303 MobiDBLite consensus disorder prediction 78 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g3088 Ahy-Chr19 153630911 153634822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g3088 1 74 G2-like Transcription Factor Family AT1G14600 73.418 2.87e-35 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ahy19g3088 Myb_DNA-binding 1.20E-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g3088 - - ahf:112712187 528.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3088 19 153630911 153634822 Ahy9g2547 9 114549183 114553152 hybridization