Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g3083 ATGGCTTCTTCTTCTCAGTGGCGTGGCAAGGCTATAATCCCTGTCCATTTCTCAGCTATTATCTTCAAGAAAACTGATCTTCAGAGTCTGAAAATATCAAGTAAATTTACAAGGACATATGGAGGTGGTTTGTTTAATCCAATGTTTTTGAAGCCTCCAGATGGCACCAAATGGGAAGTGAATTGGACTAGAAAAAATGATGATGAGGTTTGGTTCGAAAAGGGTTGGAACAAATTCACTCAAAACTACTCCTTAGATGATGGCCACTTGATTCTTTTCACCTATCATGGAAATTCACAACTTGATGTTCACATCTTTGACAAATCTGCCTCTGAAATACTCTATCCGGGGTTAAACACTACTCCTACTACTGCTTGTGATGATGAAAAGAACATCAAACTTGATCTCATGCACAATGATGATGATGATGATGACTCAATTGAGATTTTGAAGCCTTGTAAACACAAACGCAGCATGCTAGTGTTGGTTCCTCAACCTTGTAATAAAAGAATGAAAGATAAGAAGAAGGTTGCTGAAAGAAGATCAAGTTGTTCATCATTGAATTGGCCAAAGCAAGAAAGAGCACAGGAAGTAGCTATGAACTTCGTGTCTGATAATCCTTTCTTCACAATGTTCATAACCCATATCCATCTTTCACACTACAAAGCGGCTGTGCCAAACATGAAAGAGTATACTGATGAGGATGAGAAGGATGTGGAGCTGAAAATTGGGGAGAAATCGTGGAAAGTCAAACTGAGGCGTGGTAGCAACTCTTCAAATTGTCGGTACTTGGGTGGTGGATGGTCCTTGTTTGCAGATCAGAGTGAATTGCTTCCTGGAGATGTTTGTGTCTTTGAGCTCATCAACATTCATCCTTTGCAGTTTAGGGTTCATATTTTCAAAAAGCAGCAGAGTTAG 918 0.3954 MASSSQWRGKAIIPVHFSAIIFKKTDLQSLKISSKFTRTYGGGLFNPMFLKPPDGTKWEVNWTRKNDDEVWFEKGWNKFTQNYSLDDGHLILFTYHGNSQLDVHIFDKSASEILYPGLNTTPTTACDDEKNIKLDLMHNDDDDDDSIEILKPCKHKRSMLVLVPQPCNKRMKDKKKVAERRSSCSSLNWPKQERAQEVAMNFVSDNPFFTMFITHIHLSHYKAAVPNMKEYTDEDEKDVELKIGEKSWKVKLRRGSNSSNCRYLGGGWSLFADQSELLPGDVCVFELINIHPLQFRVHIFKKQQS* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g3083 305 ProSiteProfiles B3 DNA-binding domain profile. 208 303 IPR003340 GO:0003677
Ahy19g3083 305 CDD B3_DNA 208 301 IPR003340 GO:0003677
Ahy19g3083 305 ProSiteProfiles B3 DNA-binding domain profile. 15 109 IPR003340 GO:0003677
Ahy19g3083 305 Pfam B3 DNA binding domain 229 302 IPR003340 GO:0003677
Ahy19g3083 305 Pfam B3 DNA binding domain 28 108 IPR003340 GO:0003677
Ahy19g3083 305 SUPERFAMILY DNA-binding pseudobarrel domain 204 302 IPR015300 -
Ahy19g3083 305 SUPERFAMILY DNA-binding pseudobarrel domain 19 116 IPR015300 -
Ahy19g3083 305 Gene3D - 14 111 IPR015300 -
Ahy19g3083 305 PANTHER B3 DOMAIN-CONTAINING 13 302 - -
Ahy19g3083 305 CDD B3_DNA 21 107 IPR003340 GO:0003677
Ahy19g3083 305 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 13 302 - -
Ahy19g3083 305 SMART B3_2 208 303 IPR003340 GO:0003677
Ahy19g3083 305 SMART B3_2 22 109 IPR003340 GO:0003677
Ahy19g3083 305 Gene3D - 187 304 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g3083 Ahy-Chr19 153583946 153585225 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g3083 17 301 B3 DNA Binding Superfamily AT3G18990 26.934 6.11e-23 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy19g3083 B3 5.30E-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g3083 - - aip:107616196 576.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3083 19 153583946 153585225 Ahy9g2549 9 114591402 114593086 hybridization