Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g3080 ATGTCTTCTTCTTCTAAGTGGCGTGGCAAGGCTATAATCCCTGTTCATTTCTCAGCCATTATCTTCAAGAAAACTGATCTTCAAACTCTGAAAATATCAAGCAAATTTACAAGGAGATATGGAGATGGTTTGTCGAATCCAATGTTTTTGAAGCCTCCAGATGGCACCAAATGGGAAGTGAATTGGACTAGAAAAAATGAAGATGAGGTTTGGTTCGAAAAGGGTTGGAACAAATTCACTCAAAACTACTCCTTAGATGATGGCCACTTGATTCTTTTCACCTATCATGGAAATTCACAACTTGATGTTCACATCTTTGACAAATCTGCCTCTGAAATACTCTATCCGGGGTTAAACACTACTCCTACTACTGCTTGTGATGATGAAAAGAACATCAAACTTGATCTCATGCACAATGATGATGATGATGATGACTCAATTGAGATTTTGAAGCCTTGTAAACACAAACGCAGCATGCTAGTGTTGGTTCCTCAACCTTGTAATAAAAGAATGAAAGATAAGAAGAAGGTTGCTGAAAGAAGATCAAGTTGTTCATCATTGAATTGGCCAAAGCAAGAAAGAGCACAGGAAGTAGCTATGAACTTCGTGTCTGATAATCCTTTCTTCACAATGTTCATAACCCATGTCCATCTAGCACACTACAAAGCGGTACGATTAAACTACCAAATATGA 693 0.3795 MSSSSKWRGKAIIPVHFSAIIFKKTDLQTLKISSKFTRRYGDGLSNPMFLKPPDGTKWEVNWTRKNEDEVWFEKGWNKFTQNYSLDDGHLILFTYHGNSQLDVHIFDKSASEILYPGLNTTPTTACDDEKNIKLDLMHNDDDDDDSIEILKPCKHKRSMLVLVPQPCNKRMKDKKKVAERRSSCSSLNWPKQERAQEVAMNFVSDNPFFTMFITHVHLAHYKAVRLNYQI* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g3080 230 PANTHER B3 DOMAIN-CONTAINING 13 217 - -
Ahy19g3080 230 Pfam B3 DNA binding domain 27 108 IPR003340 GO:0003677
Ahy19g3080 230 ProSiteProfiles B3 DNA-binding domain profile. 15 109 IPR003340 GO:0003677
Ahy19g3080 230 SMART B3_2 22 109 IPR003340 GO:0003677
Ahy19g3080 230 CDD B3_DNA 21 107 IPR003340 GO:0003677
Ahy19g3080 230 Gene3D - 14 111 IPR015300 -
Ahy19g3080 230 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 13 217 - -
Ahy19g3080 230 SUPERFAMILY DNA-binding pseudobarrel domain 19 109 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g3080 Ahy-Chr19 153561004 153562519 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g3080 20 116 B3 DNA Binding Superfamily AT1G49475 42.268 3.13e-19 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy19g3080 B3 1.70E-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g3080 - - ahf:112777396 464.151