Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g3078 ATGTCATCTCCACCAGGCCCCATTCACTTTTTCCAGATTGTTAATGAAACCAGCCTTCAAAATGGTGAATTGAGGATTCGCAGAAGTTTTGTAAGTGAACATTGGCAAGGAATATCAAGCCCGGTATTACTTGTGCTTCCTAATGGTTCCGAATGGAAGATGGACTGGGAAAAGCGTGATGCTGATGTTTGCTTTGTTCAAGGTTGGAAGGAATTTGCAGAGTTTTATTCTTTGGAAAAGGAGCAGGTTTTGATGTTCAAGTATGAAGGAAAGTCGCGGTTCAATGTTATAATACTCGGTCGGAGTGGCTTGGAAAGAGAGTATCCTTTGTTGAATGGAACTCTTGAAGCTGAAGGGAGTGGTAACTCTAAAAGGCCAAACTCTCCGTTGCGAAAAAAGAGAAGAACCAACACAGAAGAAGAAGCTAGATTCAATGAATATTCTCATAATGCAAGGCCAAGGGACAGAGATGGAAGGAGAATCTTCTTAAAATCTGAGGCTTCTAACAATGTGGAGGCACCAAAACATGCTGAAAGTAGTAGTGCTTTGGAGAGAGCCCGGGCCTTCAGTTCTAAGAATCTTTGGTTCTATCGCAGAATGAGACCAGCGTACATCAATAACTATCTTCTGTTCAGAGCAGAAGATTATGTAACACAAGAAGAAAGAAAGGAGAATGAGTTTCTCAGTCTCTGGGTTACCGATGAGAGTAGACCATGGCATGCTAAGATCTCGAAGCATGATAATAATGGACAGATAATGCTTACTACGGGTTGGAAGCAATTTGTAAGGGACAACAACCTGAAACTAAATGATGTTTGTGTTTTTGAGAAAACTAGAAATTCTGAAGGACTTTCATTTAGAGTTATTATCTACCGTGCCACGCAAGAATCAACCAATATTCCATCTCAAGATGGAGCAAACCAAAGCAACCAAACCAATGTTAGAAACAGTTTTGCTGAAAGGGGCCATGAAGGAACTTCAAAAGAATACTCAAAAAATTACAAACGTCGCGGACGTGCCAGCAAATGGACTGAAGATCAGTTCACTATCGCCTTAAAGCAAAGTCAGACGAAAAGAAGTGCGCACATACCTTATGGCTTTGCCAAAAAATATCTACAAAAAGCAAAAGCTTTGACACTGCAGATTGGGAACAGAATATGGGAGATTAAGCTAGACTATTATCCACGTCATTCCTATGCCAGATTATCTTCGGGATGGGACAAATTTGTTAAGGATTGTAATCTTAAGGAAGCAGATGAATGCACCTTTCAGCTGATAGATAGGGAGAACTTTGTATTTGATGTTAGAATTTTAAATTGCATCAACTGA 1329 0.4011 MSSPPGPIHFFQIVNETSLQNGELRIRRSFVSEHWQGISSPVLLVLPNGSEWKMDWEKRDADVCFVQGWKEFAEFYSLEKEQVLMFKYEGKSRFNVIILGRSGLEREYPLLNGTLEAEGSGNSKRPNSPLRKKRRTNTEEEARFNEYSHNARPRDRDGRRIFLKSEASNNVEAPKHAESSSALERARAFSSKNLWFYRRMRPAYINNYLLFRAEDYVTQEERKENEFLSLWVTDESRPWHAKISKHDNNGQIMLTTGWKQFVRDNNLKLNDVCVFEKTRNSEGLSFRVIIYRATQESTNIPSQDGANQSNQTNVRNSFAERGHEGTSKEYSKNYKRRGRASKWTEDQFTIALKQSQTKRSAHIPYGFAKKYLQKAKALTLQIGNRIWEIKLDYYPRHSYARLSSGWDKFVKDCNLKEADECTFQLIDRENFVFDVRILNCIN* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g3078 442 Pfam B3 DNA binding domain 232 293 IPR003340 GO:0003677
Ahy19g3078 442 Pfam B3 DNA binding domain 14 98 IPR003340 GO:0003677
Ahy19g3078 442 Pfam B3 DNA binding domain 351 436 IPR003340 GO:0003677
Ahy19g3078 442 SUPERFAMILY DNA-binding pseudobarrel domain 3 103 IPR015300 -
Ahy19g3078 442 SMART B3_2 10 102 IPR003340 GO:0003677
Ahy19g3078 442 SMART B3_2 147 294 IPR003340 GO:0003677
Ahy19g3078 442 SMART B3_2 348 441 IPR003340 GO:0003677
Ahy19g3078 442 ProSiteProfiles B3 DNA-binding domain profile. 9 102 IPR003340 GO:0003677
Ahy19g3078 442 ProSiteProfiles B3 DNA-binding domain profile. 363 441 IPR003340 GO:0003677
Ahy19g3078 442 Gene3D - 326 441 IPR015300 -
Ahy19g3078 442 Gene3D - 175 296 IPR015300 -
Ahy19g3078 442 ProSiteProfiles B3 DNA-binding domain profile. 195 294 IPR003340 GO:0003677
Ahy19g3078 442 SUPERFAMILY DNA-binding pseudobarrel domain 189 293 IPR015300 -
Ahy19g3078 442 MobiDBLite consensus disorder prediction 132 154 - -
Ahy19g3078 442 PANTHER B3 DOMAIN-CONTAINING 7 293 - -
Ahy19g3078 442 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 309 438 - -
Ahy19g3078 442 MobiDBLite consensus disorder prediction 316 335 - -
Ahy19g3078 442 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 7 293 - -
Ahy19g3078 442 SUPERFAMILY DNA-binding pseudobarrel domain 348 440 IPR015300 -
Ahy19g3078 442 MobiDBLite consensus disorder prediction 115 154 - -
Ahy19g3078 442 CDD B3_DNA 232 292 IPR003340 GO:0003677
Ahy19g3078 442 CDD B3_DNA 348 439 IPR003340 GO:0003677
Ahy19g3078 442 Gene3D - 6 103 IPR015300 -
Ahy19g3078 442 MobiDBLite consensus disorder prediction 321 335 - -
Ahy19g3078 442 PANTHER B3 DOMAIN-CONTAINING 309 438 - -
Ahy19g3078 442 CDD B3_DNA 9 99 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g3078 Ahy-Chr19 153550371 153553024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g3078 348 435 B3 DNA Binding Superfamily AT3G18990 31.868 2.75e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy19g3078 B3 8.90E-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g3078 - - ahf:112712192 848.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3078 19 153550371 153553024 Ahy9g2553 9 114636753 114639344 hybridization