Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g3073 ATGGATCTTAGTTTTTGTTTCTCCTGCTTCTTGTTTGTTTGTTATTCAATTTCTCTTCTCTTGGTCTTAGTCAAAGGAATCATTAGTAGTATTCTTAAACACTTTGCATTTGGGAGTTCAAAGAAGGACTTCTACTATCATCTCCTTCCATCAGGTGACAAGAACATGAACATGATGATGATGCAAAACTTAACTGAGAGACTGAGGCCTCTTGTTGGATTGAACGGTTGGGACTACTGTGTATACTGGAAACTAAGTGAAGATCAAAGGTTTGTTGAGTGGTTGGGATGCTGTTGTGGTGGCACTGATCAAAACAATAATGTTGGGGAAGACATTCACATTTTCCCATGTAGGGATACCATGTTCTCACATCCCAGAACTAACCATTGTTATCTTCTTTCTCAGCTTCCTACTTCCATTTCCATGATAGATTCTGGGATTCATGCACAGACCCTATTAACAAACCAACCCAATTGGGTCAACTATTCCCCAAATATCTTGCAAGAAACAATTGGGACCCAGGTTTTGATTCCAGTGCCAGGTGGACTAGTTGAGCTGTTTGTAACCAAACAAGTACCTGAAGATCATCAAGTAATTGATTTTGTGACAGCACAATGCATTGTGTTGGTAGAGCAAGAAGCAGCAAACAACTCTACAAGTTTCAACATGCAATCAAATGTTGTTGGAGATGATAACAATAATAATAATAATAATAATAATAATAATAATAATGAAAATCAAGTGATGATGAACAACAACAACAACAATAATCAGTTTGTTCTCACAACTGCACCAGAAACTTCACCACATGATGAAATCCCCATCACTCTATGCAGTTCTCCACTCAACTTCATGCAACAGTTCAGAACAATGAATAAGAACAACGATAACAATGGAGTAGCAGCAGCATTTTCTGAAGAATATCAAGGTTCAATATTCCTCCATGAAAACCAAAACAACAATAACCAGCCAATGAAAGCAGCGGCCATGGAGGAAGAAGAAGAAGAAGAGCAGCAAGTGGGGACAAAGGAGAATAACAACAACAAAAATGAAGGAGGAGTTGTTGGTGTTGGAAGGTCAGATTCAATGTCAGATTGCAGTGATCAGAACGAAGAAGAGGAAGATGGAAAATACAGAAGGAGGAATGGAAAAGGGAACCAATCAAAGAACCTTGTTGCTGAAAGAAAGAGAAGGAAGAAACTGAATGACAGGCTGTACAATCTTCGTTCATTGGTTCCAAGAATATCCAAGCTTGATAGAGCTTCCATTCTTGGCGATGCAATTGAGTTTGTTAAGGATTTGCAAAAGCAGGTCAAGGATCTTCAAGATGAACTTGAGGACAATAACAACAATTCCGACACTACTGCTGTTGATCATCATGATAGTAGCAACCAGTTTCTTGATCATTTCGGAGCATCCTATGTTATCCCAAATCACAAGCATATGCAGCAAGAAGCAGTGGATGCCACTACTCTTACCATGGACAAGCAGCACTCCCAACAAATGGAGCCGCAAGTGGAAGTGGCAGTGATAGATGGGAAGGAGTACTTTGTGAAGGTATTCTGTGAGCACAGAGCAGGTGGGTTTGTGAAATTGATGGAGGCACTCAACACCTTAGGCATGGATGTTGTACATGCCACTGTCACTAGCCACAAAGGCCTTGTCTCTAATGTCTTCAAAGTTGAGAAAAAGGATAGTGATATGGTGGAGGCTGAGGATGTGAGAGACTCATTGCTAGAGCTTACAAGGAACCCATCATGTAGGGTGTGGAGTAATAATAATACAAAGAACAATAATCCCACATCGGAGAATTCCAATGGTGTTGGTGTGGGAAGGGATCATCATCATCATCATCATCATCACATGCCCGCATATCATCCCCATCCATTTCATACTTAA 1899 0.4018 MDLSFCFSCFLFVCYSISLLLVLVKGIISSILKHFAFGSSKKDFYYHLLPSGDKNMNMMMMQNLTERLRPLVGLNGWDYCVYWKLSEDQRFVEWLGCCCGGTDQNNNVGEDIHIFPCRDTMFSHPRTNHCYLLSQLPTSISMIDSGIHAQTLLTNQPNWVNYSPNILQETIGTQVLIPVPGGLVELFVTKQVPEDHQVIDFVTAQCIVLVEQEAANNSTSFNMQSNVVGDDNNNNNNNNNNNNNENQVMMNNNNNNNQFVLTTAPETSPHDEIPITLCSSPLNFMQQFRTMNKNNDNNGVAAAFSEEYQGSIFLHENQNNNNQPMKAAAMEEEEEEEQQVGTKENNNNKNEGGVVGVGRSDSMSDCSDQNEEEEDGKYRRRNGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKDLQDELEDNNNNSDTTAVDHHDSSNQFLDHFGASYVIPNHKHMQQEAVDATTLTMDKQHSQQMEPQVEVAVIDGKEYFVKVFCEHRAGGFVKLMEALNTLGMDVVHATVTSHKGLVSNVFKVEKKDSDMVEAEDVRDSLLELTRNPSCRVWSNNNTKNNNPTSENSNGVGVGRDHHHHHHHHMPAYHPHPFHT* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g3073 632 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 64 203 IPR025610 -
Ahy19g3073 632 CDD bHLH_AtAMS_like 388 454 - -
Ahy19g3073 632 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 385 434 IPR011598 GO:0046983
Ahy19g3073 632 Pfam Helix-loop-helix DNA-binding domain 392 435 IPR011598 GO:0046983
Ahy19g3073 632 MobiDBLite consensus disorder prediction 220 245 - -
Ahy19g3073 632 MobiDBLite consensus disorder prediction 326 396 - -
Ahy19g3073 632 MobiDBLite consensus disorder prediction 589 608 - -
Ahy19g3073 632 Coils Coil 326 346 - -
Ahy19g3073 632 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 148 590 - -
Ahy19g3073 632 Coils Coil 424 451 - -
Ahy19g3073 632 MobiDBLite consensus disorder prediction 612 632 - -
Ahy19g3073 632 MobiDBLite consensus disorder prediction 589 632 - -
Ahy19g3073 632 SMART finulus 391 440 IPR011598 GO:0046983
Ahy19g3073 632 CDD ACT_UUR-ACR-like 518 581 - -
Ahy19g3073 632 Gene3D - 374 451 IPR036638 GO:0046983
Ahy19g3073 632 PANTHER TRANSCRIPTION FACTOR ABORTED MICROSPORES 148 590 - -
Ahy19g3073 632 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 388 449 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g3073 Ahy-Chr19 153499584 153503772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g3073 61 619 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 42.036 6.70e-128 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy19g3073 bHLH-MYC_N 2.90E-17 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g3073 - - aip:107616200 1109.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3073 19 153499584 153503772 Ahy19g3073 19 153499584 153503772 ECH
Ahy19g3073 19 153499584 153503772 Ahy9g2557 9 114670612 114674788 hybridization