Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g3035 ATGGAGAACGACACCGCCGCCACCAACACCAACGGCAGCGCCACCGCCACCGCCAAACTCGCAATTGCCGGTGGGAAATCAAACAGCCACAACGAGGAAGAGGACCGCACCAATTTCAACAACGGCGTGGAGGAGCACATGGCGGAGCAAGTGGATGAAGAAGAAGAGGAAGAAGCAGAAGCAGAAGAAGACGGTGACGGTGGCGAAGGCGGTGAAGGGGAACAAACTGGATCTGCTTCTCGGCAACCTTCGAGAACCCCTTTCACCAATCTCAGCCAGGTCGATGCTGACCTTGCCCTTGCCCGAACCCTTCAGGAACAGGAAAGGGCATACATGATGCTTAGAATGAATAATGAAGGAAGTGACTATGGAAGTTGGGAAGCTGGGAGTTATTTGCATGATGATGGAGATGATTTTGATGATCTGCATGATGGAACTGATCTGGATGAAGACGATGAGGACGACGATGATGATGACGAGGAGGATTATGAGAATGAAGATGAAGATGCATTTGATGTCCATGCTCATGATGATGCTGGAGAACATGATAATCCTAGCATTGAATTTGATCCAGATGTATTTTCAAGTGATGAAGCCTATGCAAGGGCATTACAAGAGGCTGAAGAGAGGGAAATGGCAGCTAGACTCCTGGCACTTGCTGGGATAAATGACCGCGAGGCTGGGGAAGCAGAGGAGCATGGTGCTAATTCTCAGGATGCATGGGAAGATGTTGATCCAGATGAACTTTCATATGAGGAATTACTGGCATTGGGTGAAGTAGTTGGAACTGAGAGCAGAGGTCTTTCAACTGATACTCTTGCCGGTCTGCCATCAATCAAGTACAAGACTGGGAGTGATCAACATGGAAGCAATGATTCGTGTGTCATCTGTCGGATGGACTATGAGGACGACGAGTCCTTGACAGTTCTTTCCTGCAAACATCTGTACCATCCTGAGTGCATCAATAATTGGTTGAAAATAAACAAGGTTTGCCCTGTTTGCAGTACTGAGGTATCTGCTTCCGGGAGCAGCTAG 1035 0.485 MENDTAATNTNGSATATAKLAIAGGKSNSHNEEEDRTNFNNGVEEHMAEQVDEEEEEEAEAEEDGDGGEGGEGEQTGSASRQPSRTPFTNLSQVDADLALARTLQEQERAYMMLRMNNEGSDYGSWEAGSYLHDDGDDFDDLHDGTDLDEDDEDDDDDDEEDYENEDEDAFDVHAHDDAGEHDNPSIEFDPDVFSSDEAYARALQEAEEREMAARLLALAGINDREAGEAEEHGANSQDAWEDVDPDELSYEELLALGEVVGTESRGLSTDTLAGLPSIKYKTGSDQHGSNDSCVICRMDYEDDESLTVLSCKHLYHPECINNWLKINKVCPVCSTEVSASGSS* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g3035 344 MobiDBLite consensus disorder prediction 140 168 - -
Ahy19g3035 344 MobiDBLite consensus disorder prediction 75 93 - -
Ahy19g3035 344 MobiDBLite consensus disorder prediction 169 188 - -
Ahy19g3035 344 ProSiteProfiles Zinc finger RING-type profile. 294 335 IPR001841 -
Ahy19g3035 344 Coils Coil 44 64 - -
Ahy19g3035 344 MobiDBLite consensus disorder prediction 28 42 - -
Ahy19g3035 344 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 39 343 - -
Ahy19g3035 344 Pfam Ring finger domain 292 334 IPR001841 -
Ahy19g3035 344 SMART ring_2 294 334 IPR001841 -
Ahy19g3035 344 MobiDBLite consensus disorder prediction 119 192 - -
Ahy19g3035 344 MobiDBLite consensus disorder prediction 48 70 - -
Ahy19g3035 344 CDD RING-H2_PA-TM-RING 294 334 - -
Ahy19g3035 344 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 39 343 IPR043312 -
Ahy19g3035 344 MobiDBLite consensus disorder prediction 1 17 - -
Ahy19g3035 344 SUPERFAMILY RING/U-box 285 339 - -
Ahy19g3035 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 259 341 IPR013083 -
Ahy19g3035 344 MobiDBLite consensus disorder prediction 1 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g3035 Ahy-Chr19 153077962 153081291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g3035 84 238 C3H Transcription Factor Family AT3G19910 54.839 8.34e-36 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g3035 K19045 - gmx:100787418 448.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3035 19 153077962 153081291 Ahy9g2590 9 114987072 114990422 hybridization