Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g3017 ATGTCGGAGTCACCGTCTCAGCCACCGCCTCCTCCTCCAGCTCCCGAAGCGCCATCGTACTGGTGTTACCACTGCGAGAAGCGCGTCTCCGTCGAGACACTCCCTGACCTACCTGACGTCATCTGCGGTGACTGCAAGAACGGCTTCGTCGAGTCCATCCCCACTCCCTCTCTCCCTTCCTCCGCTGCCGCCGCCTCCTCCTCCGACGACCCCTACTTCGGCTCTCACTTCCTCCACGTCCTCCGCCTAATCGCCCAGTCAGCGCGTGACGACGACGCGTCTCCTCCTCCTCCGCCTAGTCGCTCGCCGGAAAACGATTTCCTCCGGATCGAGCTCGGAGGCTGGGACAACGACGACGACGAGGATGACGATGACGACGAGGAAAACGGCATCGAGTTCCACCACGGAGGCGAAGACCGCGAAAACGCAGTCGAGGAGCGAGGAGATCGAGTCGGAAACGAGGAACCGCACGGCGACGACGAAGATCTGCGGCGGAGGAGGCGCGAGCTGCTTCGTCTCCGAATTAGGGATTTGGCGACGCGAACGAGGAGTATGCGGAACCGGATCTTGGATTGGGCCGACATCCTGATGGGCCTTGAGGACAACTCCATCGAGTTCCGCCTCCAGCTGCCGGATTCCGATCGCTACGTCGGAAACCCTGAGGACTACGTCGACGCGGCGGAGTATGAGGCCTTGCTGCAGACGCTGGCGGAGAGCGACGGGGGAGGGAGGAGGGGAGCTCCGCCGGCGGCGAAGTCTGCCGTGGAGGCGCTGCCGACAGTGAAGATCTCGTCGGAGAGCGAGGTGGTGGCGTGCGCCGTATGCAAGGACATGGTGGGCGTCGGTGACGTGGCAAAGAGGTTGCCGTGCGGGCACGAGTACCATGGAGACTGCATTGTGCCGTGGTTAGGTTCTCGAAATTCGTGCCCTGTTTGCAGGTTTGAGCTGCCAACTGATGATAGAGATTATGAAGCGGACAAGAGGAAGAACAAGAGAGTCTTCAATTCTGCTAACGGTGCTTCTGGTTCAGGTGGCGGTGGCGGTGGAGGTGGCACCTTCTCTGGTTGA 1068 0.6152 MSESPSQPPPPPPAPEAPSYWCYHCEKRVSVETLPDLPDVICGDCKNGFVESIPTPSLPSSAAAASSSDDPYFGSHFLHVLRLIAQSARDDDASPPPPPSRSPENDFLRIELGGWDNDDDEDDDDDEENGIEFHHGGEDRENAVEERGDRVGNEEPHGDDEDLRRRRRELLRLRIRDLATRTRSMRNRILDWADILMGLEDNSIEFRLQLPDSDRYVGNPEDYVDAAEYEALLQTLAESDGGGRRGAPPAAKSAVEALPTVKISSESEVVACAVCKDMVGVGDVAKRLPCGHEYHGDCIVPWLGSRNSCPVCRFELPTDDRDYEADKRKNKRVFNSANGASGSGGGGGGGGTFSG* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g3017 355 MobiDBLite consensus disorder prediction 115 129 - -
Ahy19g3017 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 319 IPR013083 -
Ahy19g3017 355 Pfam Ring finger domain 272 313 IPR001841 -
Ahy19g3017 355 MobiDBLite consensus disorder prediction 89 162 - -
Ahy19g3017 355 MobiDBLite consensus disorder prediction 130 162 - -
Ahy19g3017 355 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 34 346 - -
Ahy19g3017 355 SMART ring_2 272 312 IPR001841 -
Ahy19g3017 355 Pfam zinc-ribbon 19 53 IPR039525 GO:0061630
Ahy19g3017 355 SUPERFAMILY RING/U-box 267 319 - -
Ahy19g3017 355 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 34 346 - -
Ahy19g3017 355 MobiDBLite consensus disorder prediction 334 355 - -
Ahy19g3017 355 ProSiteProfiles Zinc finger RING-type profile. 272 313 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g3017 Ahy-Chr19 152945965 152947405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g3017 183 329 C3H Transcription Factor Family AT5G01980 46.104 3.60e-35 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g3017 - - adu:107467499 580.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3017 19 152945965 152947405 Ahy9g2610 9 115119496 115120946 hybridization