Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g2997 ATGGCGAAGGGAAACAACACATCGCAAGGGAGGAAGAGAGTGGACGCCGTTGATTCTCGATCTGCATCGGTTCTTGTTCGCGCCAAGGATGGTAGCGCTTTCGCCAAATGCGATGAGTGCAAGAAGGATGTTCCTGTTGCACTCATCAGCATGCATAGTTGCAGCCTCGAAGCCAAAATCAAAATGAATCTCGAGGCACAAGTTGTGGAACAGGCTTCTGAAGCTAAGAAACCAGAGAGGAAGAAGCCAAAATCTAATGAACCAAAGGCTAAAAGAGCCAAAGTTGAGAAGACGAAGAAGGTGAAAGATCCAAATGCGCCAAAGCGTCCTCCCACAGCTTTCTTTCTCTTCATGGATGATTTTAGAAAATCTTTTAAGGAGGCAAATCCTGATTCAAAGGATGTTAAGAGGGTTAGCAAAGAGGCTGGTGAGAAATGGAGGTCCATGACTGATGAAGAGAAGAAGCCTTATTCCGATAAAGTTGTTGAGCTTAAAGCAGAATACGAGAAGGCTATGAAAAGTTATAATGCTGCTGAAGCAGAAGGGGAGGAGGGAGAAGGAGAAGGAGAGCATGAAGAGGGGGCTGATGAAAAATCTGATAAGGAAGACGCTGCTGGCGAAGACGAAGAGTTGACTGATGAAGAGTAA 648 0.4552 MAKGNNTSQGRKRVDAVDSRSASVLVRAKDGSAFAKCDECKKDVPVALISMHSCSLEAKIKMNLEAQVVEQASEAKKPERKKPKSNEPKAKRAKVEKTKKVKDPNAPKRPPTAFFLFMDDFRKSFKEANPDSKDVKRVSKEAGEKWRSMTDEEKKPYSDKVVELKAEYEKAMKSYNAAEAEGEEGEGEGEHEEGADEKSDKEDAAGEDEELTDEE* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g2997 215 SMART hmgende2 106 177 IPR009071 -
Ahy19g2997 215 MobiDBLite consensus disorder prediction 70 112 - -
Ahy19g2997 215 MobiDBLite consensus disorder prediction 175 215 - -
Ahy19g2997 215 MobiDBLite consensus disorder prediction 126 158 - -
Ahy19g2997 215 SUPERFAMILY HMG-box 98 177 IPR036910 -
Ahy19g2997 215 MobiDBLite consensus disorder prediction 72 106 - -
Ahy19g2997 215 Gene3D High mobility group box domain 102 178 IPR036910 -
Ahy19g2997 215 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 5 198 - -
Ahy19g2997 215 Pfam HMG (high mobility group) box 107 176 IPR009071 -
Ahy19g2997 215 CDD HMGB-UBF_HMG-box 107 173 - -
Ahy19g2997 215 MobiDBLite consensus disorder prediction 1 22 - -
Ahy19g2997 215 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 107 176 IPR009071 -
Ahy19g2997 215 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 5 198 - -
Ahy19g2997 215 Coils Coil 161 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g2997 Ahy-Chr19 152658011 152659557 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Ahy19g2997 HMG_box 3.90E-22 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g2997 K25507 - gmx:100810345 305.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g2997 19 152658011 152659557 Ahy9g2628 9 115320343 115321869 hybridization