Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g2977 ATGATGACGTGGACCATGAAGAGAGAAAGAGAGGCTGAAAGCATAGCCATGGCCAACTATCTCATGCTGCTTTCTGGTGGTGGAGGACTTGAGAGAACCACCACCACCACCAGCAACAACCGTGTATTCGAGTGCAAGACATGTAACAGGCAATTCTCGTCGTTTCAGGCATTAGGAGGCCACCGTGCAAGCCACAAGAAGCCGAGGCTCATGAACGGAGAAGACAGCAGTAGTGATGATAGCCATGGCTCTCCGGCAAAGCCTAAGACTCACGAGTGCTCCGTTTGCGGCTTGGAGTTCGCCATTGGCCAAGCTTTGGGTGGCCACATGAGGCGTCACAGAACAGCACCGCCACCGCCACCACCGCCACCTTCTTCAGACGTGACTAGCAATAATAAAAGAAAGAGAGAAGTTATGTTTGTGGATCTGAACTTGACTCCCTTTGAGAATGATTTGGCATTCTTGAAGATTGGACAACCAACAATAACTCATCCTCCTAACTTGGTCCATTGTTTGTAA 519 0.4971 MMTWTMKREREAESIAMANYLMLLSGGGGLERTTTTTSNNRVFECKTCNRQFSSFQALGGHRASHKKPRLMNGEDSSSDDSHGSPAKPKTHECSVCGLEFAIGQALGGHMRRHRTAPPPPPPPPSSDVTSNNKRKREVMFVDLNLTPFENDLAFLKIGQPTITHPPNLVHCL* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g2977 172 SMART c2h2final6 43 65 IPR013087 -
Ahy19g2977 172 SMART c2h2final6 91 113 IPR013087 -
Ahy19g2977 172 MobiDBLite consensus disorder prediction 107 132 - -
Ahy19g2977 172 MobiDBLite consensus disorder prediction 67 87 - -
Ahy19g2977 172 ProSitePatterns Zinc finger C2H2 type domain signature. 45 65 IPR013087 -
Ahy19g2977 172 Gene3D Classic Zinc Finger 40 113 - -
Ahy19g2977 172 PANTHER ZINC FINGER PROTEIN ZAT5 16 152 - -
Ahy19g2977 172 Pfam C2H2-type zinc finger 91 115 - -
Ahy19g2977 172 Pfam C2H2-type zinc finger 42 68 - -
Ahy19g2977 172 PANTHER ZINC FINGER PROTEIN ZAT12 16 152 - -
Ahy19g2977 172 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Ahy19g2977 172 MobiDBLite consensus disorder prediction 58 91 - -
Ahy19g2977 172 SUPERFAMILY beta-beta-alpha zinc fingers 41 113 IPR036236 -
Ahy19g2977 172 ProSiteProfiles Zinc finger C2H2 type domain profile. 43 70 IPR013087 -
Ahy19g2977 172 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 118 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g2977 Ahy-Chr19 152487453 152488260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g2977 6 155 C2H2 Transcription Factor Family AT2G37430 44.643 9.15e-36 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy19g2977 zf-C2H2_6 9.80E-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g2977 - - pvu:PHAVU_008G014600g 191.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g2977 19 152487453 152488260 Ahy19g2977 19 152487453 152488260 ECH
Ahy19g2977 19 152487453 152488260 Ahy9g2645 9 115427190 115428042 hybridization