Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g2974 ATGGTTCTATCAAACAAGAAGCTGAAGCAGAAGCTTAGAGCTGCATTGGCCAAACAGCAAAGCAACTCTGATGTAGTTGGTGTTGATGCCCCTTCTTCTTCTTCTCCTTCTTCTCATTCTCTCAAAACTCTTCTTGACTCTTCTGCCCACAAGCCCGTATTATCCAAGAGAGAGAAACGCCGAAAGCTTCGATCTTTGGAACACCCTCCAGCTGAGGCTTCTCCAAAAGCTGCCCATGAAGTTGAAGGAAGCAACAAGGAAAATGGCTCAGAGGGTTTGGGCAGTAAGAAGAAGAATAAGAAGAGGAAGGTAAAGGATGATGCTGATGTTGCAACTGAAGCTCCCAATGATGCTGAGAAATCGACGAACAAGAAGAAGAAGAAGAAGCAGAAGCAGCAGAAGAAGAAAAAGAAGACCAAAACGGTGGAGCAAAACAATTCCAATCATGAAGGGGAAGTGCCACAAGCTACAGTGTTGAATGAGAGTAGTAATAATACTAATGCTAATAGCAGTCAAGATGGTTGTGATGATCCTACAAAGGTTTATGTGGGGGGAATTCCCTATTACTCAACCGAGGATGATATTCGAAGTTATTTTGAGAGCTGTGGCACCATAACTGAAGTTGATTGCATGTGTTTTCCTGAGAGTGGCAAGTTTAGAGGGATTGCCATTATTAGTTTTAAGACAGAAGCAGCAGCAAAACGTGCATTGGCTCTTGATGGAGCTGACATGGGAGGACTCTTTCTTAAAATCCAGCCATACAAAGCAACTCGAGTCAATAAAATATCAGATTTTGCTCCAAAGATCATGGAAGGATACAATAGAACATATGTTGGGAATTTGTCATGGGATATAACCGAGGAAGAACTCAGAAAATTCTTCTCGAATTGCAACATAGCTTCGCTGCGATTTGGTATGGACAAGGATACTGGAGAATTTCGAGGGTATGCGCATGTGGATTTCAGTGATAGTCAGTCACTAAAAACAGCTCTTACAATGGACCAAAAGTTTTTGTCCGGGAGACCTGTCAGGATAAGTTGCGCAGTTCCTTTGAAGAAGAAACCAACAACGCATACAACCGCTGTGACTACAACTACAACTACAAGTAATGGGGTTGATGGCAAGAAATCAACTTCCACTGTTTCCGCTGTAAGTGGCAAGATAAAGAGGAGGACATGCTATGAGTGTGGCGAAAAAGGACATCTTTCATCAGACTGCCCAAAGAAACAAACTACGGATCCAGCTTCAACCTGA 1254 0.4274 MVLSNKKLKQKLRAALAKQQSNSDVVGVDAPSSSSPSSHSLKTLLDSSAHKPVLSKREKRRKLRSLEHPPAEASPKAAHEVEGSNKENGSEGLGSKKKNKKRKVKDDADVATEAPNDAEKSTNKKKKKKQKQQKKKKKTKTVEQNNSNHEGEVPQATVLNESSNNTNANSSQDGCDDPTKVYVGGIPYYSTEDDIRSYFESCGTITEVDCMCFPESGKFRGIAIISFKTEAAAKRALALDGADMGGLFLKIQPYKATRVNKISDFAPKIMEGYNRTYVGNLSWDITEEELRKFFSNCNIASLRFGMDKDTGEFRGYAHVDFSDSQSLKTALTMDQKFLSGRPVRISCAVPLKKKPTTHTTAVTTTTTTSNGVDGKKSTSTVSAVSGKIKRRTCYECGEKGHLSSDCPKKQTTDPAST* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g2974 417 ProSiteProfiles Zinc finger CCHC-type profile. 393 408 IPR001878 GO:0003676|GO:0008270
Ahy19g2974 417 SUPERFAMILY RNA-binding domain, RBD 158 260 IPR035979 GO:0003676
Ahy19g2974 417 MobiDBLite consensus disorder prediction 64 95 - -
Ahy19g2974 417 MobiDBLite consensus disorder prediction 15 45 - -
Ahy19g2974 417 Pfam Zinc knuckle 391 408 IPR001878 GO:0003676|GO:0008270
Ahy19g2974 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 256 IPR000504 GO:0003723
Ahy19g2974 417 MobiDBLite consensus disorder prediction 124 138 - -
Ahy19g2974 417 Gene3D - 113 262 IPR012677 -
Ahy19g2974 417 CDD RRM2_PHIP1 275 346 IPR034362 -
Ahy19g2974 417 SUPERFAMILY Retrovirus zinc finger-like domains 386 411 IPR036875 GO:0003676|GO:0008270
Ahy19g2974 417 MobiDBLite consensus disorder prediction 398 417 - -
Ahy19g2974 417 SUPERFAMILY RNA-binding domain, RBD 270 354 IPR035979 GO:0003676
Ahy19g2974 417 PANTHER PHRAGMOPLASTIN INTERACTING PROTEIN 1-RELATED 71 414 - -
Ahy19g2974 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 274 350 IPR000504 GO:0003723
Ahy19g2974 417 SMART c2hcfinal6 392 408 IPR001878 GO:0003676|GO:0008270
Ahy19g2974 417 CDD RRM1_PHIP1 181 252 IPR034361 -
Ahy19g2974 417 MobiDBLite consensus disorder prediction 102 123 - -
Ahy19g2974 417 MobiDBLite consensus disorder prediction 1 155 - -
Ahy19g2974 417 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 71 414 - -
Ahy19g2974 417 SMART rrm1_1 180 252 IPR000504 GO:0003723
Ahy19g2974 417 SMART rrm1_1 275 346 IPR000504 GO:0003723
Ahy19g2974 417 Gene3D - 366 417 - -
Ahy19g2974 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 277 343 IPR000504 GO:0003723
Ahy19g2974 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 181 247 IPR000504 GO:0003723
Ahy19g2974 417 Gene3D - 269 358 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g2974 Ahy-Chr19 152465980 152468259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g2974 165 348 Eukaryotic Initiation Factors Gene Family AT3G16380 29.744 2.43e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g2974 - - adu:107467708 667.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g2974 19 152465980 152468259 Ahy19g2974 19 152465980 152468259 ECH
Ahy19g2974 19 152465980 152468259 Ahy9g2649 9 115440545 115442705 hybridization