Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g2972 ATGGCAGTGTATAGAATTGCAATTGGATCACCAAGGGAGGCTAGCAGTCCAGCTGCCATTAGAGCAGCATTTGCTGAGTTCTTTTCAATGCTCATTTTTGTTTTTGCTGGCCAAGGCTCTGGCATGGCTTATGGTGACCACTCTACAATGGGTGGACCCGCAACACCTTCAGGTCTCATAATTGCGTCACTATCCCATGCATTTGCGCTAATGGTGGCGGTTTCTGTTGGTGCAAACATTTCAGGTGGCCATGTCAACCCTGCTGTCACATTCGGTGCCTTCGTTGGAGGAAACATAACCTTCTTGAGAAGCATTCTTTATTGGTTTGCACAGTGTCTTGGTTCTGTTGTTGCTTGCATTCTTCTCAATTTCGCCACCGGTGGAATGGAAATATCAGCTTTCTCTCTATCTAATGGGGTGTCAGTGTGGAATGCATTAATCTTTGAGATAGTGATGACTTTTGGATTGGTATACACAGTTTATGCAACAGCAGTGGATCCAAAGAAGGGTAATGTGGGAATTATAGCCCCAGTAGCAATTGGGCTGATTGTGGGTGCAAATATCTTGGTTGGTGGTGTGTTTGATGGTGCATCAATGAACCCAGCAGTGTCATTTGGGCCAGCTTTGGTTAGCTGGACATGGACCAACCATTGGGTCTATTGGGCCGGCCCATTCATTGGTTCAGCAACTGCTGCCATTCTCTATGATAATATATTCATTGGTGATGATGGTCATCAACCCCTTTCTAATAGTGACTTCTAA 762 0.4528 MAVYRIAIGSPREASSPAAIRAAFAEFFSMLIFVFAGQGSGMAYGDHSTMGGPATPSGLIIASLSHAFALMVAVSVGANISGGHVNPAVTFGAFVGGNITFLRSILYWFAQCLGSVVACILLNFATGGMEISAFSLSNGVSVWNALIFEIVMTFGLVYTVYATAVDPKKGNVGIIAPVAIGLIVGANILVGGVFDGASMNPAVSFGPALVSWTWTNHWVYWAGPFIGSATAAILYDNIFIGDDGHQPLSNSDF* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g2972 253 CDD MIP 21 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy19g2972 253 ProSitePatterns MIP family signature. 84 92 IPR022357 -
Ahy19g2972 253 SUPERFAMILY Aquaporin-like 14 242 IPR023271 -
Ahy19g2972 253 PANTHER AQUAPORIN TIP1-1 1 250 - -
Ahy19g2972 253 Gene3D Glycerol uptake facilitator protein. 4 253 IPR023271 -
Ahy19g2972 253 PRINTS Major intrinsic protein family signature 103 122 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy19g2972 253 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy19g2972 253 PRINTS Major intrinsic protein family signature 218 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy19g2972 253 PRINTS Major intrinsic protein family signature 66 90 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy19g2972 253 PRINTS Major intrinsic protein family signature 148 166 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy19g2972 253 PRINTS Major intrinsic protein family signature 181 203 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy19g2972 253 PANTHER AQUAPORIN-8 1 250 IPR034294 -
Ahy19g2972 253 Pfam Major intrinsic protein 14 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g2972 Ahy-Chr19 152456144 152457606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g2972 1 253 Major Intrinsic Protein MIP AT4G01470 79.447 1.28e-143 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g2972 K09873 - gmx:100818197 422.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g2972 19 152456144 152457606 Ahy19g2972 19 152456144 152457606 ECH
Ahy19g2972 19 152456144 152457606 Ahy9g2651 9 115453881 115455498 hybridization