Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g2945 ATGGTGTCGGTGCTGCCGTATGCAGATGTTGATTCCAGTTTGAGGGCCCTTGCTGGTTCCGCCGAGGGCTTCGGCCGCCACGCCATCGGTGGCCTCCACGGTTCTCTCTATATCGTCACCACCCTTTCAGACGATGGTCCAGGGTCCCTTCGCCAGGGGTGTCGTGAAAAGGAGCCACTGTGGATTGTTTTTGGAGTCTCCGGTACAATTCACCTTTCGTCGTACCTGAGTGTGTCATCTTACAAAACAATAGATGGCCGAGGGCAGAGGATAAAACTAACTGGAAAGGGCTTAAGGCTGAAAGAATGTGAGCACATAATTGTATGCAACCTTGAGTTTGAGGGTGGTAGGGGTCATGATGTCGACGGCATTCAGATAAAACCAAATTCCAGGCACATATGGATAGATCGATGCAGCCTTCGTGATTACGATGATGGGCTTATAGACATTACAAGACAAAGCACAGATATTACTGTATCTAGATGTTACTTTGCGCAGCATGACAAGACCATGCTGATCGGAGCTGATCCATCCCATGTTGGTGATAGGTGCATCCGGGTAACAATTCATCATTGTTTCTTCGATGGAACACGGCAAAGACAACCTCGTGTGAGATTTGGAAAAGTTCATCTGTACAACAACTACACCAGAAATTGGGCTATATATGCTATTTGTGCTAGCGTCGAATCTCAGATATACTCCCAGTGCAACATATATGAAGCAGGAGCTAAGAAGAAGACTTTTGAATTTTATACCGAGAAGGCGGCAGATAAGGAAGTGCCGAGGTCTGGAACTATTGTATCTGAAGGAGACATGCTTCTGAATGGTGCTCAACCATGCTTACTAACACGAAACAATGAAGAACCAATGTTCCATCCAAGTGAATACTATCCAACATGGACAATGGAATCAGCTGACCACTCTCTCAGAGAGATCCTCCAGTTGTGTTCAGGTTGGCAATCCATTGCTAGGCCAAAAGATAATCTGGTTCCCAATTAA 999 0.4615 MVSVLPYADVDSSLRALAGSAEGFGRHAIGGLHGSLYIVTTLSDDGPGSLRQGCREKEPLWIVFGVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHIIVCNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFAQHDKTMLIGADPSHVGDRCIRVTIHHCFFDGTRQRQPRVRFGKVHLYNNYTRNWAIYAICASVESQIYSQCNIYEAGAKKKTFEFYTEKAADKEVPRSGTIVSEGDMLLNGAQPCLLTRNNEEPMFHPSEYYPTWTMESADHSLREILQLCSGWQSIARPKDNLVPN* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g2945 332 PRINTS Pollen allergen Amb family signature 222 241 IPR018082 -
Ahy19g2945 332 PRINTS Pollen allergen Amb family signature 200 219 IPR018082 -
Ahy19g2945 332 PRINTS Pollen allergen Amb family signature 20 37 IPR018082 -
Ahy19g2945 332 SUPERFAMILY Pectin lyase-like 18 298 IPR011050 -
Ahy19g2945 332 Pfam Pectate lyase 76 238 IPR002022 -
Ahy19g2945 332 PANTHER PECTATE LYASE 3 326 - -
Ahy19g2945 332 Gene3D - 7 313 IPR012334 -
Ahy19g2945 332 PANTHER PECTATE LYASE 18-RELATED 3 326 IPR045032 GO:0030570
Ahy19g2945 332 SMART amb_all 47 245 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g2945 Ahy-Chr19 152184103 152186299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g2945 44 332 Polysaccharide Lyase AT3G55140 81.315 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g2945 K01728 - gmx:100802068 612.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g2945 19 152184103 152186299 Ahy9g2676 9 115655044 115657195 hybridization