Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g2927 ATGCCATTTCGAGCTCGCACTGCAATCTTCCGTTGGTCTCTGCATAGTGTTCCTTACAGTATCCATCACCATCAACCTCATTCTCTTCACTCTTCTTCTTCTTCCATTCTCCTCAAGTTCACTTCTTTGGCCCAACCTCAGGTTAATGGCAAATCTGTTGAAACATGTGACGATGATGGATTTTTGTCATGGTTGGAGCGGAAAGCTGGTTGTAGAATTTCTTCATCGCTTTCAATTGGTAAATCTTCATATGGCAGGTCTCTGTTTGCTTCTAAGGCGATAAAAACCGGAGATTGTATTTTGAAGGTTCCTTATAGAGTGCAAATAACAGCAGATAATCTCCCTGCTAAGATCAAATCTCTGATCAGTGAGGAAGTTGCGAATGTTGCAAAACTTGCTGTTCTTCTTCTAATTGAGCGGAAATTGGGTCAGGACTCTCAGTGGAATCCTTATATCTGCCGTCTACCATGGCAAGAGGAGTTGCATAACACGATTTTTTGGAATGAAAGTGAGCTGGAGATGATTCATCGAAGCTCGGTTTATTGGGAAACAATTAACCAAAAGTCTCAAATTGAAAGGGACTTCTTGGCAATCAGACCTATTCCTTTTGCAGATTTTGTAAACCATGATGGGAATTCAGAAGCAATTGTGATGAGTGATGATGACAAACAATTATCAGAAGTTATCTCTGATCGTGACTATGCGCCTGGGGAGCAGGTACTGATAAGATATGGAAAGTTTTCAAATGCTACATTGATGTTAGACTTCGGTTTTACAGTCCCCTACAACATTTATGACCAGGTTCAGATCCAGTTAGATATACCTAAGCATGATCCTCTGCACAAGATGAAGTTGGAACTCATGCAACAATACTTTGTGCCTTCAAGGAAAAACGCGGAAAACTTGAAACATTCTTGGAACATCTTCACAATCAAGGAGGTCAAGTGGCCTAAAGGAAAAGGGAAAGGTCTTCCGCAATCGCTTCGTGCCTTTGCTCGTGTTCTTTCTTGTACTAATCGTCAAGAACTTGATGATCTGGTTGTGGAAGCTGCACAAACTGATGGTAGGCTAGGTAGGCGGCCGTTACCGGATGTCAACAAAGAGATTCAAGCCCACCTGATGTTATCGTCATTAATCGGCAAATTAATTGAGGAGCGCAGTGCAGCCATTATGTCATTGGAGGAGTCTTCCAATTGTTCATCATTTTGTGTAAGAGTTCCTGTTAGAAGATTCATGGCCCGGGATCTCCTACGCGGCGAACTTCGCATTCTGAATTCTGCTTTTACATGGCTGGAGAACTACTGTTTGTCGTCAACTTAA 1320 0.4212 MPFRARTAIFRWSLHSVPYSIHHHQPHSLHSSSSSILLKFTSLAQPQVNGKSVETCDDDGFLSWLERKAGCRISSSLSIGKSSYGRSLFASKAIKTGDCILKVPYRVQITADNLPAKIKSLISEEVANVAKLAVLLLIERKLGQDSQWNPYICRLPWQEELHNTIFWNESELEMIHRSSVYWETINQKSQIERDFLAIRPIPFADFVNHDGNSEAIVMSDDDKQLSEVISDRDYAPGEQVLIRYGKFSNATLMLDFGFTVPYNIYDQVQIQLDIPKHDPLHKMKLELMQQYFVPSRKNAENLKHSWNIFTIKEVKWPKGKGKGLPQSLRAFARVLSCTNRQELDDLVVEAAQTDGRLGRRPLPDVNKEIQAHLMLSSLIGKLIEERSAAIMSLEESSNCSSFCVRVPVRRFMARDLLRGELRILNSAFTWLENYCLSST* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g2927 439 SUPERFAMILY SET domain 59 263 IPR046341 -
Ahy19g2927 439 Gene3D set domain protein methyltransferase, domain 1 58 199 - -
Ahy19g2927 439 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 201 433 - -
Ahy19g2927 439 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 51 200 - -
Ahy19g2927 439 PANTHER OS01G0976450 PROTEIN 201 433 - -
Ahy19g2927 439 Pfam SET domain 85 245 IPR001214 GO:0005515
Ahy19g2927 439 Gene3D set domain protein methyltransferase, domain 1 200 258 - -
Ahy19g2927 439 Gene3D - 261 434 IPR036464 -
Ahy19g2927 439 ProSiteProfiles SET domain profile. 69 245 IPR001214 GO:0005515
Ahy19g2927 439 Pfam Rubisco LSMT substrate-binding 276 424 IPR015353 -
Ahy19g2927 439 PANTHER OS01G0976450 PROTEIN 51 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g2927 Ahy-Chr19 151980587 151986910 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Ahy19g2927 SET 7.60E-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g2927 K19199 - gmx:100818002 535.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g2927 19 151980587 151986910 Ahy19g2927 19 151980587 151986910 ECH
Ahy19g2927 19 151980587 151986910 Ahy9g2694 9 115813926 115820382 hybridization