Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g2790 ATGATGCATCAACAGCATCATCACGATGATGATGTTTCTGCCTCTGTTCTTTGGGGTGGCCATAAAAGAGGGCGTCAGGAAGAAACTAATATTCAGACTGCTGGTACATCTTCTCATAATCAATTGTTACAACATGTCACTACTCTTCATGCATCACAACCAAGTGCAGGAACAACTTCAAGCGAAAGTGGTACATCCTACGAAGAGACAGGAGAGAGAAAGAGGAAATACAGAGGAGTGAGGCAGAGACCATGGGGAAAATGGGCCGCAGAGATTCGAGACCCTCACAAAGCAGCAAGAGTTTGGCTTGGAACCTTTGACACTGCGGAAGCTGCCGCAAGAGCTTATGATGAAGCCGCATTGAGGTTTAGAGGAAACAGAGCCAAACTCAACTTCCCTGAAAATGTCAAAGCAGTCCCAGTACCACCACAACAAACAACTGTCCTTCAGGCATCTCCCGTACCAGTTTTTCGGCCGGTGATGCAGGGGCCACGGCCTCCTCTTCAGGTCTCTCCTGAGCAGATGATGAATGACTACTTGCAATATTCTGAGTTATTGAAGAGCTCTGGTGACCACTTTCATGGACAGTGGCTTTACCGTTCACAAATGAATTTGGCAGATCAAACTTCGTTATTATTATCAACGTCTTCGGGTTCGTCTTCGCTTTCATTTTCGTCTTCATTGCCGGCTGAGTTTTCACCGTCTACGAGTCAATCCTCCTCTGCTTCATTTCCTCTGCTGTTTTCTTCAGTTCAACAGCAACCAGGACATCAACCAGGATTTTTCCGTCCACCGAGATATTATTCTGACAATATCAGAGGAGCAAGCGGCGGATTGAGTTTTCCACCACCTTCAACGTGGTCAGATACCCATGGCTATCCTCCTCCGAATTGA 894 0.4664 MMHQQHHHDDDVSASVLWGGHKRGRQEETNIQTAGTSSHNQLLQHVTTLHASQPSAGTTSSESGTSYEETGERKRKYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVKAVPVPPQQTTVLQASPVPVFRPVMQGPRPPLQVSPEQMMNDYLQYSELLKSSGDHFHGQWLYRSQMNLADQTSLLLSTSSGSSSLSFSSSLPAEFSPSTSQSSSASFPLLFSSVQQQPGHQPGFFRPPRYYSDNIRGASGGLSFPPPSTWSDTHGYPPPN* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g2790 297 SMART rav1_2 76 139 IPR001471 GO:0003700|GO:0006355
Ahy19g2790 297 MobiDBLite consensus disorder prediction 50 66 - -
Ahy19g2790 297 MobiDBLite consensus disorder prediction 252 297 - -
Ahy19g2790 297 SUPERFAMILY DNA-binding domain 76 134 IPR016177 GO:0003677
Ahy19g2790 297 PRINTS Ethylene responsive element binding protein signature 99 115 IPR001471 GO:0003700|GO:0006355
Ahy19g2790 297 PRINTS Ethylene responsive element binding protein signature 77 88 IPR001471 GO:0003700|GO:0006355
Ahy19g2790 297 Gene3D AP2/ERF domain 75 135 IPR036955 GO:0003700|GO:0006355
Ahy19g2790 297 CDD AP2 76 135 IPR001471 GO:0003700|GO:0006355
Ahy19g2790 297 ProSiteProfiles AP2/ERF domain profile. 76 133 IPR001471 GO:0003700|GO:0006355
Ahy19g2790 297 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 22 257 - -
Ahy19g2790 297 PANTHER DNA-BINDING DOMAIN 22 257 IPR044808 GO:0003700|GO:0009873
Ahy19g2790 297 Pfam AP2 domain 76 125 IPR001471 GO:0003700|GO:0006355
Ahy19g2790 297 MobiDBLite consensus disorder prediction 50 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g2790 Ahy-Chr19 149732086 149733856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g2790 24 141 AP2-EREBP Transcription Factor Family AT2G33710 54.622 2.77e-37 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy19g2790 AP2 2.60E-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g2790 - - adu:107467893 465.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g2790 19 149732086 149733856 Ahy19g2790 19 149732086 149733856 ECH
Ahy19g2790 19 149732086 149733856 Ahy9g2806 9 117149561 117151323 hybridization