Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g2728 ATGGCAGCCTCTTCCGCCGGAAATCCGCCGACCTCCTCCCTTTCCTCATCCGCAGCATTATCTCGCGAGAAATTGAATTTCTCGGCGGATTATCCCGCGCGAATCGCACTATCCTCCGATCAGCTGAAACACTGTACGGAAGCGCTCTCGTTCTTCAAGGAGAAGCTCCACACTCCTCAGAGGATAGCTCAAGAGTTCGCTCGCTTGCAGGCAAATAGGATAACGCCAAGTGAGATGAGGAGAAGATGCACTGTGGCTCTGGATGCTGTCAATTTGAGCAAAAATCGATATACTGATGTGTTGCCATTTGACAATAACAGGGTTGTTCTCAAGTCTAGCACGGATTATAGGCCTGAAGCACAGGGATATATCAATGCAAGCTGCATATCTGCCTCTTTGCCCGGAAATGTGTCGCAATTTATAGCCACACAAGGGCCGTTGCCTCACACATATGAGGATTTCTGGGAAATGGTAATCCAATATCATTGCCCTGCAATTGTGATGCTTACTAAGTTGGTCGACAATTACAAGACGATAAAGTGTGGAGATTACTTTCAAGCTGAGGATGGACCTAGAGAATGTGGTAATATCTCTATTATCAGTAAATGGATAAAATCTACTGAAACTTCACTGGTGTTGCGCCATTTGGAAGTAAATCATAAAGAGGCCGAAGATACACCGTTATCGGTTTTGCACATTCAGTATCCTGAATGGCCAGACCATGGAGTTCCAAGAGATACATCTGCTGTTCGTGAGATTTTTAGAAGATTGCACCATTTACCGGCAAACCTTGGCCCAATAGTGGTGCACTGCAGTGCAGGCATTGGTAGAACTGGAACATACTGCACAATTCACAACACAATTCAGAGAATACTTGCTGGTGATATGTCCGCTTTAGATATCTCAAGTACAATAGCTATGTTCAGGTCCCAACGAATTGGAATGGTTCAGACCCAGGATCAGTTTGTTTTCTGCTATGAAGCTATCATAGATGAACTAGAAGACCTTGTTTCTCTACAGCAGTGA 1026 0.4483 MAASSAGNPPTSSLSSSAALSREKLNFSADYPARIALSSDQLKHCTEALSFFKEKLHTPQRIAQEFARLQANRITPSEMRRRCTVALDAVNLSKNRYTDVLPFDNNRVVLKSSTDYRPEAQGYINASCISASLPGNVSQFIATQGPLPHTYEDFWEMVIQYHCPAIVMLTKLVDNYKTIKCGDYFQAEDGPRECGNISIISKWIKSTETSLVLRHLEVNHKEAEDTPLSVLHIQYPEWPDHGVPRDTSAVREIFRRLHHLPANLGPIVVHCSAGIGRTGTYCTIHNTIQRILAGDMSALDISSTIAMFRSQRIGMVQTQDQFVFCYEAIIDELEDLVSLQQ* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g2728 341 SMART PTPc_3 61 334 IPR000242 GO:0004725|GO:0006470
Ahy19g2728 341 Gene3D Protein tyrosine phosphatase superfamily 35 334 IPR029021 -
Ahy19g2728 341 ProSiteProfiles PTP type protein phosphatase domain profile. 62 332 IPR000242 GO:0004725|GO:0006470
Ahy19g2728 341 PANTHER PROTEIN-TYROSINE-PHOSPHATASE PTP1 15 338 - -
Ahy19g2728 341 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 46 334 IPR029021 -
Ahy19g2728 341 SMART ptp_7 229 331 IPR003595 -
Ahy19g2728 341 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 15 338 - -
Ahy19g2728 341 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 251 323 IPR000387 GO:0016311|GO:0016791
Ahy19g2728 341 CDD PTPc_plant_PTP1 123 327 - -
Ahy19g2728 341 PRINTS Protein tyrosine phosphatase signature 315 325 IPR000242 GO:0004725|GO:0006470
Ahy19g2728 341 PRINTS Protein tyrosine phosphatase signature 228 245 IPR000242 GO:0004725|GO:0006470
Ahy19g2728 341 PRINTS Protein tyrosine phosphatase signature 122 129 IPR000242 GO:0004725|GO:0006470
Ahy19g2728 341 PRINTS Protein tyrosine phosphatase signature 266 284 IPR000242 GO:0004725|GO:0006470
Ahy19g2728 341 PRINTS Protein tyrosine phosphatase signature 299 314 IPR000242 GO:0004725|GO:0006470
Ahy19g2728 341 PRINTS Protein tyrosine phosphatase signature 140 160 IPR000242 GO:0004725|GO:0006470
Ahy19g2728 341 ProSitePatterns Tyrosine specific protein phosphatases active site. 269 279 IPR016130 GO:0016311|GO:0016791
Ahy19g2728 341 Pfam Protein-tyrosine phosphatase 91 330 IPR000242 GO:0004725|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g2728 Ahy-Chr19 148661516 148665592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g2728 40 338 Protein tyrosine phosphatase (PTP) family AT1G71860 68.896 3.90e-163 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g2728 - - gmx:548044 550.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g2728 19 148661516 148665592 Ahy19g2728 19 148661516 148665592 ECH
Ahy19g2728 19 148661516 148665592 Ahy9g2864 9 117812710 117816783 hybridization