Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g2720 ATGATTTTCAACCAAAAGCTTTGCCCTTTTGTTCTTTTCAAATCTTTTGCACTGATGGGTACCTCGAATCTTCTCCTCTTTCTCTTCTCTCTGCTGGGTTTGTGTGCTTTGTCAGCTGCCAAAGTGGTGCTGATTGGGAACAACATCACTCTCTCCTTCGATGATATCGAAGCTAATTTCGCTCCGACGATCAAAGGGTCTGGAGAATGTGGGGTCTTATATTCGGCAGAGCCACTTGATGCTTGCACTGACCTCACGAACAAAGCTCCACAACTTCCGAATGCGAGTTTGCCTTTTGTTTTGATGATTAGGGGAGGATGTAGCTTTGAGGAAAAGGTCAGAAGAGCACAAGCGGCTGGCTACAAAGCTGCAATTGTCTATGACAATGAGGATAGTGGTGTCTTGGTTGCAATGGCAGGAAATTCTGCTGGCATAAGAATACATGCTGTGTTTATATCAAAAGCTTCAGGTGAATTACTAAAGGAATACGCCGGAAGGACTGATGTGGAGCTATGGCTTATTCCAAGTTTTGAGAACTCAGCATGGTCGATCATGGCAATTTCATTTATTTCCCTACTAGCAATGTCTGCTGTGCTTGCCACCTGTTTCTTTGTTCGTAGGCATCGCATAAGAAGGGAAAGGCCTCAAGCTTCTCGTGTTCGTGAATTTCATGGTATGAGTAGTCGCCTAGTGAAAGCAATGCCTAGTTTGATATTTACTGCAGTCTTAGAAGACAACTGTACCTCCAGAACATGTGCCATATGTCTTGAAGATTATTGTGTTGGAGAGAAGCTCAGGATACTTCCTTGTTGTCACAAGTTTCATGCTATATGCGTGGATTCTTGGCTTACCTCATGGAGAACATTTTGCCCCGTTTGTAAGCGTGATGCAAGAACTGGTTTAAGCGAACCTCCGCCTTCTGAGTCCACGCCTTTGCTTTCGACCAGCCCAGCATCTGTATCATCCTCCATCTTATCTTCTACAAGGTCATCATTAGCGTCATCCCCAGCTATTCAAATTGCTCGTCCACCTTCACATGCCTCGTCCGTTTCTCGCAACCACTCTTTAGCTAGCACCCCTTACGTTCAGCCGTCTTATAGGTCCTACCGACAATCCCCATCGCTAAGCATCAGTCGAAGCTCTGTAGACCTTAGGAATGCATCCCAAAGATCTCTAGCTTCTCACTTGAATTCACCACATTCCATGGGCTACCCATCTTTGTCTTCTCTTAACTCGAGGTTCATGTCTCCTTATGTTCCAAGTCCAAGCAATGCTTCTGTAAGTATTCTCGGGTCATCAAGTCACCGACAGCATCCACTCCGATACAGTGAGTCAGCTGCGAGTTTCTCGCCATTTGCATCCGCAAACTCCCTCCCAGAGTGTTAA 1386 0.456 MIFNQKLCPFVLFKSFALMGTSNLLLFLFSLLGLCALSAAKVVLIGNNITLSFDDIEANFAPTIKGSGECGVLYSAEPLDACTDLTNKAPQLPNASLPFVLMIRGGCSFEEKVRRAQAAGYKAAIVYDNEDSGVLVAMAGNSAGIRIHAVFISKASGELLKEYAGRTDVELWLIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPQASRVREFHGMSSRLVKAMPSLIFTAVLEDNCTSRTCAICLEDYCVGEKLRILPCCHKFHAICVDSWLTSWRTFCPVCKRDARTGLSEPPPSESTPLLSTSPASVSSSILSSTRSSLASSPAIQIARPPSHASSVSRNHSLASTPYVQPSYRSYRQSPSLSISRSSVDLRNASQRSLASHLNSPHSMGYPSLSSLNSRFMSPYVPSPSNASVSILGSSSHRQHPLRYSESAASFSPFASANSLPEC* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g2720 461 PANTHER PROTEASE-ASSOCIATED (PA) RING/U-BOX ZINC FINGER PROTEIN 19 395 - -
Ahy19g2720 461 Pfam Ring finger domain 251 294 IPR001841 -
Ahy19g2720 461 Pfam PA domain 83 160 IPR003137 -
Ahy19g2720 461 CDD mRING-H2-C3H2C2D_ZSWM2 251 294 - -
Ahy19g2720 461 Gene3D - 41 174 - -
Ahy19g2720 461 SMART ring_2 252 293 IPR001841 -
Ahy19g2720 461 CDD PA_C_RZF_like 35 181 IPR044744 -
Ahy19g2720 461 MobiDBLite consensus disorder prediction 303 319 - -
Ahy19g2720 461 ProSiteProfiles Zinc finger RING-type profile. 252 294 IPR001841 -
Ahy19g2720 461 SUPERFAMILY RING/U-box 242 305 - -
Ahy19g2720 461 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 19 395 - -
Ahy19g2720 461 SUPERFAMILY PA domain 100 168 IPR046450 -
Ahy19g2720 461 MobiDBLite consensus disorder prediction 299 319 - -
Ahy19g2720 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 212 299 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g2720 Ahy-Chr19 148485543 148490445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g2720 37 460 C3H Transcription Factor Family AT1G22670 48.618 7.36e-123 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g2720 K15692 - gmx:100791248 663.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g2720 19 148485543 148490445 Ahy9g2871 9 117902448 117907282 hybridization