Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g2671 ATGCTGTTTCGCCCTTCAACTGGTAATCTGGATGAGAGGGTCACAGACAGAGTCTTGTATGATATTTTAATTCAAGCCGGACGAGTGGTAGATTTACATATTCCTAAAGATAAGGAATCAGAAAAACCGAAAGGCTTTGCCTTTGCAGAATATGAAACTGAGGAGATTGCGGATTATGCTGTCAAGCTTTTCTCAGGCCTTGTAACACTCTACAACAGAACACTGAAGTTTGCGATATCTGGGAGAGACAAAACCCCTAACGGTTCTGCTGGAGTTACACCAACATCAAATTCTTCTCAAAGATCAAGGCCTTATCCAGTGCCGTTTAATAACTCAGAATCTGATAAGCTATCAGCACATGACCGTTTTTCAGATTATGCAGCTCCTCGTCGCCGAGTAACTGACCTACCCAGTGGCCATGGATCTTACCACAGTGGCCATGATTTTGAGTCCAGCCGTAGAGCTTTTGGGGCAACATTGGATAGCATAAGTGGTTCTAGGTCTCGCCGCTAG 513 0.4444 MLFRPSTGNLDERVTDRVLYDILIQAGRVVDLHIPKDKESEKPKGFAFAEYETEEIADYAVKLFSGLVTLYNRTLKFAISGRDKTPNGSAGVTPTSNSSQRSRPYPVPFNNSESDKLSAHDRFSDYAAPRRRVTDLPSGHGSYHSGHDFESSRRAFGATLDSISGSRSRR* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g2671 170 MobiDBLite consensus disorder prediction 115 129 - -
Ahy19g2671 170 SUPERFAMILY RNA-binding domain, RBD 8 80 IPR035979 GO:0003676
Ahy19g2671 170 MobiDBLite consensus disorder prediction 80 149 - -
Ahy19g2671 170 SMART rrm1_1 8 78 IPR000504 GO:0003723
Ahy19g2671 170 MobiDBLite consensus disorder prediction 86 114 - -
Ahy19g2671 170 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 76 IPR000504 GO:0003723
Ahy19g2671 170 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 82 IPR000504 GO:0003723
Ahy19g2671 170 PANTHER OS01G0876500 PROTEIN 7 170 - -
Ahy19g2671 170 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 7 170 - -
Ahy19g2671 170 Gene3D - 7 88 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g2671 Ahy-Chr19 147718810 147722044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g2671 7 83 Eukaryotic Initiation Factors Gene Family AT1G49760 29.870 8.15e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g2671 K12831 - gmx:100784532 249.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g2671 19 147718810 147722044 Ahy9g2904 9 118267165 118270385 hybridization