Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g2621 ATGGACAGAAGCAGAACAAGAACAACAACATCAGCAATACAAACATGCTTAGATTCTCAACTATGGCACGCCTGCGCAGGCCCCATGGTTCAAATGCCACCTCTCAACACCAAAGTCTTGTACTTCCCACAAGGCCACGCTGAACACGAACAAGCTCATGCCCATGGTCGAAAACCCCATTTTGCCCCTACCATCAAAACCCCCATTCCGCCCTTCTTCCCTTGCACACTCACCGCCATCAAATACATGGCAGAACCTGAAACCGACGAGGTCTACGTCAAGATCACCCTCACCCCTCTCCCTCAACAACACCACCTCTCAGACCCAGAAGAACACGATCATCATTGTAGTAGTAATCATAATAGTTTCTTGGACAACAATAATAATGGTGAAAAGCCTGCTTCTTTTGCAAAGACTCTAACACAATCCGATGCCAACAATGGCGGCGGTTTCTCTGTGCCTCGTTACTGCGCCGAAACCATTTTCCCAAGGCTTGATTACTCCGCAGAGCCTCCGGTTCAGACCATAATCGCAAAAGACGTGCATGGGCAGTGTTGGAAGTTCAGACACATTTATAGAGGCACGCCAAGGAGGCACCTTTTGACTACTGGTTGGAGCAATTTCGTTAACCACAAGAAGCTTGTTGCCGGTGACTCCATTGTTTTCCTCCGAGCCCAAAATGGTGACCTTTGTGTTGGGATTAGGAGGGCCAAGAAGGGTGGTATTGGTGCTGGAACCGCCACAAATACTAATATTAGTACGACTAATAATGTTGGTTATGGTGGTGGTGAATGTAATTGTGTTGGTGAGGCTGTGAATTGTGCTGTGAATGGAAGGGCATTTGAGGTGGTGTATTATCCAAGAGGGAGCTCACCGGAGTTTTGTGTGAAGGCTTCTTCAGTGAGAGCTTCAATGCAGATTCAATGGTGTTCTGGTATGAGATTCAAGATGCCCTTTGAGACTGAGGACTCTTCCAGAATCAGTTGGTTCATGGGGACTATTTCTTCTGTCCAGCTTTCAGATCCTCTTCATTGGCCTCATTCTCCTTGGCGTCTTCTTCAGGTGGTATGGGATGAACCAGATCTACTCCAAAATGTGAAGTGTGTGAATCCTTGGTTAGTTGAACTAGTCTCAAATGTGCCAAACTTTCATCTCTCTCCATTCTCACCACCAAGGAAGAAACAAAGGTTCCTACAAGACCAACCAGATTTTCAACTCATCAACCAATTTCCACCTGCATCATCATTCTCCACCATTCAAGATCATCAAGGCATACAGGGAGCCAGGCATGCCCATCAATTCGGGCTCGCTCCGCAAGATTTCCACATTCTTGATGGATTTCCAAGGCTTGATCATGCAGCACAACACCCTCATAGGCCTAGTTTTGGAATCTACAACAAGAACAACTCCGCCGCCACCAAGAACAATAACAATCTTGAGATATCTTGCTTGTTGAGTGTGGGAAATCCTGGCCAGAGTTTCAATAAGGAGGAGTCTTGTTCCAATGAAACAAAAGCACCACACATTTTGTTGTTTGGGAAGCTCATTCACACTGATCAGCAGAACCATTCATCAAACAGTTCAAATAGTGTTTATGAAGGAACTAATTCATCACTCAAGACATCAATTGAAAACTCTTCTGATGATGGAGGGTCTCCCTGGTTCAAAAATCAGCACAAGAATAATGATCTTGTTGGAACTGAAAACATTAACATATTGTGTATGGCCTTATAA 1734 0.4516 MDRSRTRTTTSAIQTCLDSQLWHACAGPMVQMPPLNTKVLYFPQGHAEHEQAHAHGRKPHFAPTIKTPIPPFFPCTLTAIKYMAEPETDEVYVKITLTPLPQQHHLSDPEEHDHHCSSNHNSFLDNNNNGEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDVHGQCWKFRHIYRGTPRRHLLTTGWSNFVNHKKLVAGDSIVFLRAQNGDLCVGIRRAKKGGIGAGTATNTNISTTNNVGYGGGECNCVGEAVNCAVNGRAFEVVYYPRGSSPEFCVKASSVRASMQIQWCSGMRFKMPFETEDSSRISWFMGTISSVQLSDPLHWPHSPWRLLQVVWDEPDLLQNVKCVNPWLVELVSNVPNFHLSPFSPPRKKQRFLQDQPDFQLINQFPPASSFSTIQDHQGIQGARHAHQFGLAPQDFHILDGFPRLDHAAQHPHRPSFGIYNKNNSAATKNNNNLEISCLLSVGNPGQSFNKEESCSNETKAPHILLFGKLIHTDQQNHSSNSSNSVYEGTNSSLKTSIENSSDDGGSPWFKNQHKNNDLVGTENINILCMAL* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g2621 577 MobiDBLite consensus disorder prediction 105 119 - -
Ahy19g2621 577 Gene3D - 308 382 - -
Ahy19g2621 577 PANTHER AUXIN RESPONSE FACTOR 16 11 560 - -
Ahy19g2621 577 SMART B3_2 136 238 IPR003340 GO:0003677
Ahy19g2621 577 MobiDBLite consensus disorder prediction 120 134 - -
Ahy19g2621 577 MobiDBLite consensus disorder prediction 520 555 - -
Ahy19g2621 577 Gene3D - 134 238 IPR015300 -
Ahy19g2621 577 SUPERFAMILY DNA-binding pseudobarrel domain 132 236 IPR015300 -
Ahy19g2621 577 CDD B3_DNA 135 236 IPR003340 GO:0003677
Ahy19g2621 577 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 11 560 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ahy19g2621 577 Pfam B3 DNA binding domain 136 237 IPR003340 GO:0003677
Ahy19g2621 577 ProSiteProfiles B3 DNA-binding domain profile. 136 238 IPR003340 GO:0003677
Ahy19g2621 577 MobiDBLite consensus disorder prediction 104 134 - -
Ahy19g2621 577 Pfam Auxin response factor 271 354 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g2621 Ahy-Chr19 146576428 146578926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g2621 17 564 B3 DNA Binding Superfamily AT4G30080 51.505 0.0 539
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ahy19g2621 B3 3.60E-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g2621 - - gmx:100803053 700.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g3074 12 120203136 120206994 Ahy19g2621 19 146576428 146578926 ECH
Ahy19g2621 19 146576428 146578926 Ahy19g2621 19 146576428 146578926 ECH
Ahy19g2621 19 146576428 146578926 Ahy9g2943 9 118836832 118839196 hybridization