Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g2612 ATGGGTTTGTTCGGCAGTTTCTTGGGGATCATTGGTTTTGTATTTGGAATCCCTCTTGGCCTCTTGGTAGGGTTCTTTGTGTTTGTTTACTCAGAAACCAAACAAGTGAAGGAACCTGTTGTTAGGCCAATCAGTGAATTAGGCCCACATGCATTGCAAGAACTTCTGCCTGAGATTCCTCTTTGGGTGAAGACACCTGATTATGAACGGGTTGATTGGTTAAACAAGTTTTTATTGGATATGTGGCCTTACTTAGACAAGGCAATCTGTGAGATTATTAGAAGCACAACAAAACCGATTTTTGCTGAATACATTGGAAAGTATCAGATTAAAGCAATTGAGTTTGAAGAGTTAACGCTTGGTACTCTTCCCCCAACTATTTGTGGCATGAAAGTCTTAGAAACAAATGAAAAGGAATTGGTCATGGAACAAGTTATCAAATGGGCTGGAAATCCTAACATAGTGTTGAATTTGCAAGTGTCATCGTTGAATATCACAGTTCAGTTGGTTGACTTACAAGTATTTGCAATGCCAAGGATAACTTTAAGACCTTTAGTTCCTACATTTCCATGTTTTGCAAAGGTTGTGGTATCTTTGCTGGAGAAGCCTCATGTGGATTTTGGGATGAAAATATCAGGAGGAGACATCATGGCAATACCTGGTCTTTATAGATTTGTTCAGGAAACGATTAAAAAACAAGTTGCGAGCCTCTATCTGTGGCCTCAAACACTAGAAATTCCTATTCTTGACGAATCGACGGTGGCGATAAAGAAGCCGGTGGGAATATTACACGTGAATGTCATTCGGGCGCATAAGCTTCTGAAGATGGATTTGTTGGGAAGTTCTGATCCTTATGTCAAACTAAGCCTCACTGGGGACAAACTTCCAGCAAAGAAAACCACTGTCAAAAGGAAGAATTTGAATCCTGTGTGGAATGAGAAATTCAAGCTTGTTGTAAAGGATCCTCAATCTCAAGTTCTCCAATTACAAGTCTTTGACTGGGACAAGGTTGGTGCACATGACAAGCTGGGAATGCAATTAATCCCTCTTAAGATGCTTAAACCTTATGACAACAAAGAATTCACACTTGATTTGCTAAAGGACACAAACATAAATGAAACTCCAAGTAAGAAGCCAAGAGGGCAAATTGTAGTGGACTTGACATTTGTTCCATTCAAAGAAGATAGTAACAAGTTTGGTGGGAACTCAGAAGGGTATGGAAGAAAGGAAAGTGGAATTGATGTGGTATCTGATGATGAGGTGCAAGAAGGAGCAGGTTTGCTTTCAGTTATAATCCAAGAGGCTGAGGAGGTTGAAGGGGAGCATCACAACAACCCTTTTGCAGTCTTGACTTTTAACGGCGAAAAGAGAAAAACTAAGGTAATGAAGAAAACTCGTCACCCACGTTGGAATGAAGAGTTCCAATTCATGCTAGAGGAGCCTCCTCTACGTGAGAAGATTCACATTGAAATTATGAGCAAGAGGAAGACCTTTAGTTTTCTCTCGAAGGAATCACTGGGGCATGTGGAGATTAACCTGAATGATGTAGTGCACAATGGTCGCATTAATGATAGATACCATCTTATAAATTCAAAGAATGGTGAGATACATGTTGATATACGTTGGAAGGTCGTTTGA 1638 0.4005 MGLFGSFLGIIGFVFGIPLGLLVGFFVFVYSETKQVKEPVVRPISELGPHALQELLPEIPLWVKTPDYERVDWLNKFLLDMWPYLDKAICEIIRSTTKPIFAEYIGKYQIKAIEFEELTLGTLPPTICGMKVLETNEKELVMEQVIKWAGNPNIVLNLQVSSLNITVQLVDLQVFAMPRITLRPLVPTFPCFAKVVVSLLEKPHVDFGMKISGGDIMAIPGLYRFVQETIKKQVASLYLWPQTLEIPILDESTVAIKKPVGILHVNVIRAHKLLKMDLLGSSDPYVKLSLTGDKLPAKKTTVKRKNLNPVWNEKFKLVVKDPQSQVLQLQVFDWDKVGAHDKLGMQLIPLKMLKPYDNKEFTLDLLKDTNINETPSKKPRGQIVVDLTFVPFKEDSNKFGGNSEGYGRKESGIDVVSDDEVQEGAGLLSVIIQEAEEVEGEHHNNPFAVLTFNGEKRKTKVMKKTRHPRWNEEFQFMLEEPPLREKIHIEIMSKRKTFSFLSKESLGHVEINLNDVVHNGRINDRYHLINSKNGEIHVDIRWKVV* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g2612 545 Gene3D C2 domain 427 545 IPR035892 -
Ahy19g2612 545 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 247 IPR039010 -
Ahy19g2612 545 PRINTS C2 domain signature 327 335 IPR000008 -
Ahy19g2612 545 PRINTS C2 domain signature 278 290 IPR000008 -
Ahy19g2612 545 PRINTS C2 domain signature 305 318 IPR000008 -
Ahy19g2612 545 ProSiteProfiles C2 domain profile. 240 363 IPR000008 -
Ahy19g2612 545 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Ahy19g2612 545 CDD C2 428 529 - -
Ahy19g2612 545 PANTHER SYNAPTOTAGMIN-3 1 544 - -
Ahy19g2612 545 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 258 393 IPR035892 -
Ahy19g2612 545 ProSiteProfiles C2 domain profile. 407 526 IPR000008 -
Ahy19g2612 545 Pfam C2 domain 427 527 IPR000008 -
Ahy19g2612 545 Pfam C2 domain 261 358 IPR000008 -
Ahy19g2612 545 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 426 542 IPR035892 -
Ahy19g2612 545 CDD C2 263 365 - -
Ahy19g2612 545 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 544 IPR045050 GO:0008289
Ahy19g2612 545 SMART C2_3c 262 362 IPR000008 -
Ahy19g2612 545 SMART C2_3c 427 525 IPR000008 -
Ahy19g2612 545 Gene3D C2 domain 256 411 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g2612 Ahy-Chr19 146423720 146427803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g2612 258 530 Lipid Metabolism Gene Families AT3G61300 26.644 4.02e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g2612 - - gmx:100813029 967.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g2612 19 146423720 146427803 Ahy19g2612 19 146423720 146427803 ECH
Ahy19g2612 19 146423720 146427803 Ahy9g2950 9 118939780 118944236 hybridization