LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy19g2578	ATGCCGGCAAAGAATCTCATGGCCGAGAGGCAGCGCAAGAAGAAGCTTAATGATAGGTTGTACATGCTTAGGTCTGTTGTGCCAAAGATTAGCAAGATGGATAGGGCTTCGATACTTGGGGATGCAATCGACTACTTGAGGGAGTTACTACAGTGGATTAATGATCTTTACAATGAACTGGAGTCAACTCCACCTGGCCCTTCGCTGCAATCTTCCACCACCAGCCTTCAACCTTTGACACCCACGCCGCAAACCCTTCCATGCCGGGTGAAGGAAGAACTGTATCCTGGTGTCTTGCCAAGCCCCAAAAATCAACTTGCAAAGGTTTATTTGGCTGCAGGGAGTGCAATGAATAAGGGTCAGGCAGAGAGAAGAGATTGCTAA	384	0.4818	MPAKNLMAERQRKKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLRELLQWINDLYNELESTPPGPSLQSSTTSLQPLTPTPQTLPCRVKEELYPGVLPSPKNQLAKVYLAAGSAMNKGQAERRDC*	128

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy19g2578	127	MobiDBLite	consensus disorder prediction	61	85	-	-
	Ahy19g2578	127	SMART	finulus	6	55	IPR011598	GO:0046983
	Ahy19g2578	127	MobiDBLite	consensus disorder prediction	61	84	-	-
	Ahy19g2578	127	PANTHER	BHLH TRANSCRIPTIONAL FACTOR	1	109	-	-
	Ahy19g2578	127	CDD	bHLH_AtAMS_like	3	74	-	-
	Ahy19g2578	127	Gene3D	-	3	64	IPR036638	GO:0046983
	Ahy19g2578	127	Pfam	Helix-loop-helix DNA-binding domain	7	49	IPR011598	GO:0046983
	Ahy19g2578	127	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	1	49	IPR011598	GO:0046983
	Ahy19g2578	127	PANTHER	TRANSCRIPTION FACTOR SCREAM2-RELATED	1	109	-	-
	Ahy19g2578	127	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	5	71	IPR036638	GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy19g2578	Ahy-Chr19	145442732	145446801	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy19g2578	1	118	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT3G26744	77.500	2.31e-55	177

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Ahy19g2578		HLH	5.00E-08	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy19g2578	-		-	ahf:112779231	218.009