Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g2457 ATGATGGCGTTCTTCAGTGGAGCTCAGCGATTTCTCCGCCAGTCTTCTATAGTTGTGGCCTCCCACTTCACCTCTACTCGTTTCACTTCGACTCTTACTTCCCCAAAACTCTTCATCAGCGGTCTTTCAAGACTGACAACAGATGAAAAACTTACTGAAGCGTTTTCTCCTTTCGGGCAGCTGCTTCAAGCAAAGGTTATAACCGATAGAGCCTCTGGACGGTCAAAGGGATTTGGATTTGTAACTTATGCGACCATAGAAGATGCTGAAAAGGCGAGAGCCGGAATGAATGCTAAATTTATTGATGGATGGGTTATATTTGTTGATCCTGCCAAACCAAGAGAGCCCAGACCTCCTCAGCAGCCAGAGTCTCAGCCCTCTGGAGCTGGTTTCACGGTTAACAAGACAATTGGATGGTGTGGTTGA 426 0.4671 MMAFFSGAQRFLRQSSIVVASHFTSTRFTSTLTSPKLFISGLSRLTTDEKLTEAFSPFGQLLQAKVITDRASGRSKGFGFVTYATIEDAEKARAGMNAKFIDGWVIFVDPAKPREPRPPQQPESQPSGAGFTVNKTIGWCG* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g2457 141 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 113 IPR000504 GO:0003723
Ahy19g2457 141 PANTHER NUCLEOLAR PROTEIN 8 2 141 - -
Ahy19g2457 141 Gene3D - 24 134 IPR012677 -
Ahy19g2457 141 SUPERFAMILY RNA-binding domain, RBD 34 134 IPR035979 GO:0003676
Ahy19g2457 141 MobiDBLite consensus disorder prediction 111 133 - -
Ahy19g2457 141 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 2 141 - -
Ahy19g2457 141 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 103 IPR000504 GO:0003723
Ahy19g2457 141 SMART rrm1_1 36 109 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g2457 Ahy-Chr19 141579520 141581490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g2457 24 97 Eukaryotic Initiation Factors Gene Family AT4G34110 31.081 8.66e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g2457 - - gmx:100306326 189.504