Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g2424 ATGGCTGACCCTTACGGCCTCCCAGAGGATCTCCGGCGACTCATGTCCAACAGACCCCACTTCACCACTGCCACCGCCGCCGCTCCTTTCTTTCCTCTTCCGGAGAACCCACTCTCTCTCCACCACCACCACCACCTCCTCAATGCTCCTCCTCCACCACCGCCTCTCAACACCACCTACGACCCCATCATCATCAACAACGTCGTCGGCGACCTTTTCTTTCCTCGTTCTAATAACAACAACACCAGCGCCGCCTTCACCGCTCATCATCATCACTTCCCTCTCCATCACCACCACCACAACTCCACCAACAATTCCCCGTCTTCTTCTTCTCTCAACCCCACACCCCCGCCACCTCCTCCTCCTCCTACTACTTCTGTCTCAGATCATCATCATCATGCATTCATGGCCGCCATGGACACTGCTTCTGCTGCTGCTGCTGCATCCATGGACAAAGGATGGCTGGCCTTCGACACCGGCACCAACCGCTGGCCTCGGCAGGAGACTCTCTCCCTTCTTGAGATCAGATCTCGTCTTGATTCCAAGTTCAGAGAAAATAATCAAAAAGCTCCCTTGTGGAATGAGATTTCTAGGATAATGGCTGAGGAATTTGGGTACCAAAGGAGTGGGAAGAAATGCAAAGAGAAGTTTGAGAATTTGTACAAGTATTACAAGAAGACCAAGGAGGGAAAAGCTAGTAGACAAGATGGGAAACACTACAGATTCTTCAGGCAACTTGAAGCTATATGTGGTGGCGGCGGCGGCAGCGGCGGAAGTGGTGGAGATTCATCAAACACTACTCATAATAATAATCTTCATGCCTTAGCTTCAAACACTGCTTCAGCTTCTGTTGCTGGTGCTAATGTTCAAACCCCAATAAGCTTCAATAATGGTGATCATCATAACAATAATAGCTTGATCAAGTGTTCAGAGAGCTTGAGTTTTTCGAACTCGTGTGAACTGGAGACATCGTCATCTGAGAACAATGATGAGGATCTTTCAGCCATTGCATACATGATGAAGCACTCCACATCTTCAAGGGACAACAATAATAACAAGCAGAAAGGGGTGCAATTGGATGATGATCATCATGGGGGAAGGGTGAGAAGAAGAAGAAGCTTGAGGGCAAAAGTGGAAGAGATAGTTGGTTCCCACATGAGGAAGATCATCGAGACACAAGATGCATGGATGGAGAGAATGGTGAGTGTTGTTGAGCAAAGGGAAAAGGAGATGGCATCCATGGAGGAAGAGAGGAAGAAGAAAGAGTCAATGAGGTTTGACCAAGAAGTAACCGAGCTTTGGGCAAAAGAGAGAGCTTGGGTTGAAGCAAGGGATGCTGCATTGATAGAAGTTGTAAGAAAACACATTGGAAATGGAAACAATAATATCAACAATAATAAAGAGTTTGAGATTATTGAAGCATTGGCACCTCAAAGCAATAACAAGAACAACAAGGGCCAAACTGCAAATAATAACAACAATAATGGTGGTGGTGGTGGGAGGTGGAGTGAAATGGAGATATCAAACTTGATACAGTTGAGGACAGGGTTTGAAGAGAGAATGAGGGAGAATAATAATAATAATAATGGTGGAGGAGGGTATTATTTTGAGAGTAATAATAATAATAATAATAATAATGGGGTAAGTAGTGTTTGGGAAGAGATCTCAGGAAAATTGGGATGTTTGGGATTTGAGAGAAGTTCAGAAGAGTGTAAGCAGATTTGGGATGAGATCAGCATCTCACTTGGGAGGACAAATACTTCTGCTGCTGCTGCTGTTGCCAAAACCAATAGGCCTTGGTGTTTGGAACTCAAGCTCACTGATGATGATGATGATGATGATGAACATCATCATGATCATGATGATCATCACATTTGA 1878 0.4526 MADPYGLPEDLRRLMSNRPHFTTATAAAPFFPLPENPLSLHHHHHLLNAPPPPPPLNTTYDPIIINNVVGDLFFPRSNNNNTSAAFTAHHHHFPLHHHHHNSTNNSPSSSSLNPTPPPPPPPPTTSVSDHHHHAFMAAMDTASAAAAASMDKGWLAFDTGTNRWPRQETLSLLEIRSRLDSKFRENNQKAPLWNEISRIMAEEFGYQRSGKKCKEKFENLYKYYKKTKEGKASRQDGKHYRFFRQLEAICGGGGGSGGSGGDSSNTTHNNNLHALASNTASASVAGANVQTPISFNNGDHHNNNSLIKCSESLSFSNSCELETSSSENNDEDLSAIAYMMKHSTSSRDNNNNKQKGVQLDDDHHGGRVRRRRSLRAKVEEIVGSHMRKIIETQDAWMERMVSVVEQREKEMASMEEERKKKESMRFDQEVTELWAKERAWVEARDAALIEVVRKHIGNGNNNINNNKEFEIIEALAPQSNNKNNKGQTANNNNNNGGGGGRWSEMEISNLIQLRTGFEERMRENNNNNNGGGGYYFESNNNNNNNNGVSSVWEEISGKLGCLGFERSSEECKQIWDEISISLGRTNTSAAAAVAKTNRPWCLELKLTDDDDDDDEHHHDHDDHHI* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g2424 625 CDD GT1 162 228 - -
Ahy19g2424 625 MobiDBLite consensus disorder prediction 479 503 - -
Ahy19g2424 625 SMART sant 160 223 IPR001005 -
Ahy19g2424 625 SMART sant 498 581 IPR001005 -
Ahy19g2424 625 PANTHER - 72 587 - -
Ahy19g2424 625 Coils Coil 397 424 - -
Ahy19g2424 625 MobiDBLite consensus disorder prediction 479 499 - -
Ahy19g2424 625 MobiDBLite consensus disorder prediction 95 129 - -
Ahy19g2424 625 ProSiteProfiles Myb-like domain profile. 162 221 IPR001005 -
Ahy19g2424 625 MobiDBLite consensus disorder prediction 354 372 - -
Ahy19g2424 625 Gene3D - 502 581 - -
Ahy19g2424 625 Gene3D - 164 226 - -
Ahy19g2424 625 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL-LIKE 72 587 - -
Ahy19g2424 625 Pfam Myb/SANT-like DNA-binding domain 162 249 IPR044822 -
Ahy19g2424 625 MobiDBLite consensus disorder prediction 344 372 - -
Ahy19g2424 625 MobiDBLite consensus disorder prediction 111 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g2424 Ahy-Chr19 140607617 140610834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g2424 163 579 Trihelix Transcription Factor Family AT5G03680 40.639 2.30e-82 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Ahy19g2424 Myb_DNA-bind_4 5.90E-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g2424 - - ahf:112711553 823.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g2424 19 140607617 140610834 Ahy9g1981 9 107428321 107431521 hybridization