Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g2362 ATGGCGAATGGTATCACGCACGAGCCTTCTCCTTCCATGCTCGTGTACCGGTTTAACGCCTTACTTCCAAAGCGCCAAGGCTACCTCAAGGCTTTCTCTACCGAAGAAATTGTTCGGACGTATGGGCTATTGTTGTCAGAACTCACCTCCACTGTGAATCCCATCATTACCGATCTCACTATCATTGCCGGCCAGCAGACGAAACACGCCAAGGGCATCGCCGATGCCATTTGCAACCGGATTCTTGAGGTGCCTGCTGATAAAAAACTTCCTTCTCTCTATCTTCTGGACAGTATTGTGAAGAATTTTGGCCAGGAATATGTTAAACACTTCTCTTTACGTCTACCTCAAGTTTACTGCGAAGCATACAGGCAGGTCCAGCCCAATCTGCATTCTGTTCTGCAACGTCTCTTTGGTACCTGGTCAAAGATCTTCCCTCCCTCTGTCCTAAGCAATATTGAAGCTCAATTGCAATCTTCACCAGCAGTTAATAATCAACAACCCTTTGCTAATCACCTTGGGGCATATGATTTTCGTAGACCGATTCTTGGGGCACATGTTATTAAACCACAATCCTTGCAGCAGATGGAACACTCTAGTTCAATTATGGATAATGTTGGTGGTGATAGGTTGGACTCAACGGGAACTGTAGGTAATACAAGAGAAGGAGGGTTGGATGAATGGCAGCAAAAGAGATTTTCTAGTGATGGTTGGAACATATTTCAAACTTCTAAGACTTGTAATCTCAATGATGAACAACAACGTCAAAGTCCAAGAGCTCTTATTGAGGCATATGGTTGTGACAAAGGCCATGAAATTCCTAGTACTAAGCTTTTGTTGGTGGAGCAGCATCCTGGCAGAAATGGTTTAGGGAGCAAGTTTCCATTGGCATCATGGCAGGACACTGAAGAAGAGGAGTTTGATTGGAAAGATATGAATCCAGGATTAGTAGACTGTAGTAGAAACAGCAGTTCTATGCAATCAAGTGTTAGATTCTCCAGGAAAAGGAAGTTATCTAATGATCTATCTAATTCTTCACAGTACCCCTTCAATATGGGGGCTGCTCCCCCTGCTTTCAATGCTCATGCTACTCGTCCTTCCGGCTTGAATCCAGCATTTCCATTGCAAAAACGTCCTAGGAGTCTGTTTGAACCAATAAACGTTAATAATAACACCAATGTGGGTCATGGTCCAAATAGAACTCTGTTTATGCATGACCAGTTGCCTAATCAACCTGGACCAATTTCCTCTAACCTGCAAAATCATGGACAAGCACCTCAACTACAGTTTCTTCCACCTCAAGTTCCATCTTCAACACAAATTAGTCATGGGAGCTCTTTGCATTTACATGGGGGAACCTTGCCACCTTTACGTCCAAGCCTCCCAACTGCTCCATCACAAATAATGTCTCATCCCCATGGCGATGATTCGGTGACAAGTCAACCACCACCTGCATATCTTGATTTGATTAGTTCACTAGTGAACCACGGTGTGATCTCGGTAACCAATCCACCCACCGGACTGGATTCCATTGGGACGGAGTTCGATCCAGATATCTTGAAGGTTCGTCATGAAGGTGTAATCAGTGCCTTATACGGTGATCTTCCTAGACAATGCACGAGCTGCGGTCTCCGATTCAAAAGGCAAGATGAACACAGTAGACATATGGATTGGCATGTGACTAGGAACCGAATGTCAAAAAGCCGGAAGCAGAAGGGGTCTCAAAAGTGGTTTGCAAGTGGGAGCCTGTGGCTAAGTGGTGCAGAGGCTTCGGGAAAGGAATCGATTCCGGGGTCGTTGGTTCCCGAGGAGACAGGGGAAATGAAAGACGACGAAGAGTTAGGCGTTCCTGCTGAAGAGGATCAGAGTAGATGTGCACTGTGTGGAGAGGGATTCGATGAGTTTTACAGCCACGAAATGGATGAGTGGATGTATAGAGGAGCCACATACCTTAAGGCACCCATGGGAACAACATTGGCCACCATGGACAGACATCAACTAGGGCCCATTGTTCATTCCAAATGCAGATCTGACTCTGACTCTACTATGCCTTCAACCAACAGTGAAGCTACCAAGAGAGTAGTAAGAGAAAAAGAATGCGGGTCGACCAAACATCAGTTTTGTGCACCCTTAATTAGGACTTACTAA 2148 0.453 MANGITHEPSPSMLVYRFNALLPKRQGYLKAFSTEEIVRTYGLLLSELTSTVNPIITDLTIIAGQQTKHAKGIADAICNRILEVPADKKLPSLYLLDSIVKNFGQEYVKHFSLRLPQVYCEAYRQVQPNLHSVLQRLFGTWSKIFPPSVLSNIEAQLQSSPAVNNQQPFANHLGAYDFRRPILGAHVIKPQSLQQMEHSSSIMDNVGGDRLDSTGTVGNTREGGLDEWQQKRFSSDGWNIFQTSKTCNLNDEQQRQSPRALIEAYGCDKGHEIPSTKLLLVEQHPGRNGLGSKFPLASWQDTEEEEFDWKDMNPGLVDCSRNSSSMQSSVRFSRKRKLSNDLSNSSQYPFNMGAAPPAFNAHATRPSGLNPAFPLQKRPRSLFEPINVNNNTNVGHGPNRTLFMHDQLPNQPGPISSNLQNHGQAPQLQFLPPQVPSSTQISHGSSLHLHGGTLPPLRPSLPTAPSQIMSHPHGDDSVTSQPPPAYLDLISSLVNHGVISVTNPPTGLDSIGTEFDPDILKVRHEGVISALYGDLPRQCTSCGLRFKRQDEHSRHMDWHVTRNRMSKSRKQKGSQKWFASGSLWLSGAEASGKESIPGSLVPEETGEMKDDEELGVPAEEDQSRCALCGEGFDEFYSHEMDEWMYRGATYLKAPMGTTLATMDRHQLGPIVHSKCRSDSDSTMPSTNSEATKRVVREKECGSTKHQFCAPLIRTY* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g2362 715 CDD CID_Pcf11 38 159 - -
Ahy19g2362 715 SMART 558neu5 36 158 IPR006569 -
Ahy19g2362 715 ProSitePatterns Zinc finger C2H2 type domain signature. 539 559 IPR013087 -
Ahy19g2362 715 MobiDBLite consensus disorder prediction 319 343 - -
Ahy19g2362 715 SUPERFAMILY ENTH/VHS domain 34 159 IPR008942 -
Ahy19g2362 715 MobiDBLite consensus disorder prediction 589 620 - -
Ahy19g2362 715 MobiDBLite consensus disorder prediction 674 693 - -
Ahy19g2362 715 MobiDBLite consensus disorder prediction 675 690 - -
Ahy19g2362 715 Pfam CID domain 53 151 IPR006569 -
Ahy19g2362 715 MobiDBLite consensus disorder prediction 434 454 - -
Ahy19g2362 715 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 12 680 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Ahy19g2362 715 ProSiteProfiles CID domain profile. 33 161 IPR006569 -
Ahy19g2362 715 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 12 680 - -
Ahy19g2362 715 Gene3D - 29 159 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g2362 Ahy-Chr19 138302652 138307954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g2362 439 680 C2H2 Transcription Factor Family AT4G04885 56.048 2.55e-81 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy19g2362 CID 1.80E-12 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g2362 K14400 - aip:107640327 566.614