Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ahy19g2362 | ATGGCGAATGGTATCACGCACGAGCCTTCTCCTTCCATGCTCGTGTACCGGTTTAACGCCTTACTTCCAAAGCGCCAAGGCTACCTCAAGGCTTTCTCTACCGAAGAAATTGTTCGGACGTATGGGCTATTGTTGTCAGAACTCACCTCCACTGTGAATCCCATCATTACCGATCTCACTATCATTGCCGGCCAGCAGACGAAACACGCCAAGGGCATCGCCGATGCCATTTGCAACCGGATTCTTGAGGTGCCTGCTGATAAAAAACTTCCTTCTCTCTATCTTCTGGACAGTATTGTGAAGAATTTTGGCCAGGAATATGTTAAACACTTCTCTTTACGTCTACCTCAAGTTTACTGCGAAGCATACAGGCAGGTCCAGCCCAATCTGCATTCTGTTCTGCAACGTCTCTTTGGTACCTGGTCAAAGATCTTCCCTCCCTCTGTCCTAAGCAATATTGAAGCTCAATTGCAATCTTCACCAGCAGTTAATAATCAACAACCCTTTGCTAATCACCTTGGGGCATATGATTTTCGTAGACCGATTCTTGGGGCACATGTTATTAAACCACAATCCTTGCAGCAGATGGAACACTCTAGTTCAATTATGGATAATGTTGGTGGTGATAGGTTGGACTCAACGGGAACTGTAGGTAATACAAGAGAAGGAGGGTTGGATGAATGGCAGCAAAAGAGATTTTCTAGTGATGGTTGGAACATATTTCAAACTTCTAAGACTTGTAATCTCAATGATGAACAACAACGTCAAAGTCCAAGAGCTCTTATTGAGGCATATGGTTGTGACAAAGGCCATGAAATTCCTAGTACTAAGCTTTTGTTGGTGGAGCAGCATCCTGGCAGAAATGGTTTAGGGAGCAAGTTTCCATTGGCATCATGGCAGGACACTGAAGAAGAGGAGTTTGATTGGAAAGATATGAATCCAGGATTAGTAGACTGTAGTAGAAACAGCAGTTCTATGCAATCAAGTGTTAGATTCTCCAGGAAAAGGAAGTTATCTAATGATCTATCTAATTCTTCACAGTACCCCTTCAATATGGGGGCTGCTCCCCCTGCTTTCAATGCTCATGCTACTCGTCCTTCCGGCTTGAATCCAGCATTTCCATTGCAAAAACGTCCTAGGAGTCTGTTTGAACCAATAAACGTTAATAATAACACCAATGTGGGTCATGGTCCAAATAGAACTCTGTTTATGCATGACCAGTTGCCTAATCAACCTGGACCAATTTCCTCTAACCTGCAAAATCATGGACAAGCACCTCAACTACAGTTTCTTCCACCTCAAGTTCCATCTTCAACACAAATTAGTCATGGGAGCTCTTTGCATTTACATGGGGGAACCTTGCCACCTTTACGTCCAAGCCTCCCAACTGCTCCATCACAAATAATGTCTCATCCCCATGGCGATGATTCGGTGACAAGTCAACCACCACCTGCATATCTTGATTTGATTAGTTCACTAGTGAACCACGGTGTGATCTCGGTAACCAATCCACCCACCGGACTGGATTCCATTGGGACGGAGTTCGATCCAGATATCTTGAAGGTTCGTCATGAAGGTGTAATCAGTGCCTTATACGGTGATCTTCCTAGACAATGCACGAGCTGCGGTCTCCGATTCAAAAGGCAAGATGAACACAGTAGACATATGGATTGGCATGTGACTAGGAACCGAATGTCAAAAAGCCGGAAGCAGAAGGGGTCTCAAAAGTGGTTTGCAAGTGGGAGCCTGTGGCTAAGTGGTGCAGAGGCTTCGGGAAAGGAATCGATTCCGGGGTCGTTGGTTCCCGAGGAGACAGGGGAAATGAAAGACGACGAAGAGTTAGGCGTTCCTGCTGAAGAGGATCAGAGTAGATGTGCACTGTGTGGAGAGGGATTCGATGAGTTTTACAGCCACGAAATGGATGAGTGGATGTATAGAGGAGCCACATACCTTAAGGCACCCATGGGAACAACATTGGCCACCATGGACAGACATCAACTAGGGCCCATTGTTCATTCCAAATGCAGATCTGACTCTGACTCTACTATGCCTTCAACCAACAGTGAAGCTACCAAGAGAGTAGTAAGAGAAAAAGAATGCGGGTCGACCAAACATCAGTTTTGTGCACCCTTAATTAGGACTTACTAA | 2148 | 0.453 | MANGITHEPSPSMLVYRFNALLPKRQGYLKAFSTEEIVRTYGLLLSELTSTVNPIITDLTIIAGQQTKHAKGIADAICNRILEVPADKKLPSLYLLDSIVKNFGQEYVKHFSLRLPQVYCEAYRQVQPNLHSVLQRLFGTWSKIFPPSVLSNIEAQLQSSPAVNNQQPFANHLGAYDFRRPILGAHVIKPQSLQQMEHSSSIMDNVGGDRLDSTGTVGNTREGGLDEWQQKRFSSDGWNIFQTSKTCNLNDEQQRQSPRALIEAYGCDKGHEIPSTKLLLVEQHPGRNGLGSKFPLASWQDTEEEEFDWKDMNPGLVDCSRNSSSMQSSVRFSRKRKLSNDLSNSSQYPFNMGAAPPAFNAHATRPSGLNPAFPLQKRPRSLFEPINVNNNTNVGHGPNRTLFMHDQLPNQPGPISSNLQNHGQAPQLQFLPPQVPSSTQISHGSSLHLHGGTLPPLRPSLPTAPSQIMSHPHGDDSVTSQPPPAYLDLISSLVNHGVISVTNPPTGLDSIGTEFDPDILKVRHEGVISALYGDLPRQCTSCGLRFKRQDEHSRHMDWHVTRNRMSKSRKQKGSQKWFASGSLWLSGAEASGKESIPGSLVPEETGEMKDDEELGVPAEEDQSRCALCGEGFDEFYSHEMDEWMYRGATYLKAPMGTTLATMDRHQLGPIVHSKCRSDSDSTMPSTNSEATKRVVREKECGSTKHQFCAPLIRTY* | 716 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ahy19g2362 | 715 | CDD | CID_Pcf11 | 38 | 159 | - | - | |
Ahy19g2362 | 715 | SMART | 558neu5 | 36 | 158 | IPR006569 | - | |
Ahy19g2362 | 715 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 539 | 559 | IPR013087 | - | |
Ahy19g2362 | 715 | MobiDBLite | consensus disorder prediction | 319 | 343 | - | - | |
Ahy19g2362 | 715 | SUPERFAMILY | ENTH/VHS domain | 34 | 159 | IPR008942 | - | |
Ahy19g2362 | 715 | MobiDBLite | consensus disorder prediction | 589 | 620 | - | - | |
Ahy19g2362 | 715 | MobiDBLite | consensus disorder prediction | 674 | 693 | - | - | |
Ahy19g2362 | 715 | MobiDBLite | consensus disorder prediction | 675 | 690 | - | - | |
Ahy19g2362 | 715 | Pfam | CID domain | 53 | 151 | IPR006569 | - | |
Ahy19g2362 | 715 | MobiDBLite | consensus disorder prediction | 434 | 454 | - | - | |
Ahy19g2362 | 715 | PANTHER | PRE-MRNA CLEAVAGE COMPLEX II | 12 | 680 | IPR045154 | GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379 | |
Ahy19g2362 | 715 | ProSiteProfiles | CID domain profile. | 33 | 161 | IPR006569 | - | |
Ahy19g2362 | 715 | PANTHER | POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 | 12 | 680 | - | - | |
Ahy19g2362 | 715 | Gene3D | - | 29 | 159 | IPR008942 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ahy19g2362 | Ahy-Chr19 | 138302652 | 138307954 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ahy19g2362 | 439 | 680 | C2H2 Transcription Factor Family | AT4G04885 | 56.048 | 2.55e-81 | 273 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Ahy19g2362 | CID | 1.80E-12 | CL0020 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ahy19g2362 | K14400 | - | aip:107640327 | 566.614 |