Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g2334 ATGGAAACACCAGAGGAACTCACCTTGGGTTCCAAAGACCATACCAACATCGTCAAAGGCAAGAGAACAAAGAGGGTACGGCCTCAATCCCCCATCCCCTTCTCCATCGCCGCAGCAGAAGAAGAAGGAGGGGAGACTAATATACCATCGCAACGACAAGAAGAAGAAAAAGAAGATATTATTTACAATGCGAATGCGAATGGCAACACAGCAACTACTTCTTCCGTGGGTCCACGAGACAGCACGGAAGAAGAGGAGGACATGGCCAACTGCCTCATCCTGTTAGCACAAGGACAATCCAGGGAATCCCCAAGACGCCCGGCCGCCGTAGCAGAAGAAGAAGGAGGAGGAACAAGCTACAACAAGTACAGCAGTAGGAAGTTTCTAGAAGCTGCCGGAGTCGGCGTTGGGTACGGAGGAGGAAGAACAGGAGGATATTATGTATACGAGTGCAAAACATGTAACAGGACATTTCCGTCTTTTCAAGCACTTGGTGGACACAGGGCAAGCCACAAGAAACCCAAGGCCGCCATTCCTGCAATCTCCATTCACCAAGAAAGAAAACAACCACCGCCATTGTTCTCCTCAGACGAAGAAGAGTTCCAATTCAAGAACACCACCGCCAACAAATCAAGCTTCCTCCAGTTGAACACAAGAGGGAATAATTTGTATAGCAATAACAATAACAAATCCAAGGTTCACGAATGTTCCATTTGCGGAGCTGAATTTACATCTGGACAGGCACTTGGTGGACATATGAGGCGGCACCGAGCTCCGGTGGGGACTAACACTAACACTAACACCACGCTTTCGCTGACCACGACCACCACGGCTGCCGCCATGGAAGCAGATGAGGAGCAACCTAAGAAGAAGACGAAGGTGTTATCTTTGGATTTGGATCTCAACCTTCCGGCACCGGAAGATCAAGATCAAAGGGAATCCAAGTTTGCCTTTGTATCCAAGCAACCACCAACGCAACCGCAACCCCAACCGCAACCGCAGAAGCAGCAACCACAAACAAGTCTTGTCTTCTCTACTACACCAGCTTTGGTGGATTGTCATTACTGA 1068 0.4906 METPEELTLGSKDHTNIVKGKRTKRVRPQSPIPFSIAAAEEEGGETNIPSQRQEEEKEDIIYNANANGNTATTSSVGPRDSTEEEEDMANCLILLAQGQSRESPRRPAAVAEEEGGGTSYNKYSSRKFLEAAGVGVGYGGGRTGGYYVYECKTCNRTFPSFQALGGHRASHKKPKAAIPAISIHQERKQPPPLFSSDEEEFQFKNTTANKSSFLQLNTRGNNLYSNNNNKSKVHECSICGAEFTSGQALGGHMRRHRAPVGTNTNTNTTLSLTTTTTAAAMEADEEQPKKKTKVLSLDLDLNLPAPEDQDQRESKFAFVSKQPPTQPQPQPQPQKQQPQTSLVFSTTPALVDCHY* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g2334 355 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 11 355 - -
Ahy19g2334 355 MobiDBLite consensus disorder prediction 250 271 - -
Ahy19g2334 355 ProSitePatterns Zinc finger C2H2 type domain signature. 236 256 IPR013087 -
Ahy19g2334 355 PANTHER ZINC FINGER PROTEIN ZAT5 11 355 - -
Ahy19g2334 355 ProSiteProfiles Zinc finger C2H2 type domain profile. 149 176 IPR013087 -
Ahy19g2334 355 SUPERFAMILY beta-beta-alpha zinc fingers 148 256 IPR036236 -
Ahy19g2334 355 Gene3D Classic Zinc Finger 147 256 - -
Ahy19g2334 355 MobiDBLite consensus disorder prediction 20 84 - -
Ahy19g2334 355 SMART c2h2final6 149 171 IPR013087 -
Ahy19g2334 355 SMART c2h2final6 234 256 IPR013087 -
Ahy19g2334 355 ProSiteProfiles Zinc finger C2H2 type domain profile. 234 256 IPR013087 -
Ahy19g2334 355 MobiDBLite consensus disorder prediction 302 347 - -
Ahy19g2334 355 MobiDBLite consensus disorder prediction 47 61 - -
Ahy19g2334 355 ProSitePatterns Zinc finger C2H2 type domain signature. 151 171 IPR013087 -
Ahy19g2334 355 MobiDBLite consensus disorder prediction 63 78 - -
Ahy19g2334 355 Pfam C2H2-type zinc finger 148 174 - -
Ahy19g2334 355 Pfam C2H2-type zinc finger 233 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g2334 Ahy-Chr19 137443075 137444714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g2334 1 355 C2H2 Transcription Factor Family AT5G04390 41.944 2.92e-75 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy19g2334 zf-C2H2_6 7.10E-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g2334 - - gmx:100799383 362.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1696 16 59206202 59207612 Ahy19g2334 19 137443075 137444714 ECH
Ahy12g3028 12 119827169 119828313 Ahy19g2334 19 137443075 137444714 ECH
Ahy18g0541 18 5266612 5268280 Ahy19g2334 19 137443075 137444714 ECH
Ahy13g0276 13 2797332 2798735 Ahy19g2334 19 137443075 137444714 ECH
Ahy19g2334 19 137443075 137444714 Ahy19g2334 19 137443075 137444714 ECH
Ahy19g2334 19 137443075 137444714 Ahy9g1908 9 105428231 105429642 hybridization