Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g2301 ATGTCCAATAATTCCACTTCTCAATCAAAAGATGGTTTTGATGCTAGTGGTTTCACATATGGCGTAGCATTCATACTAGCCGGTGTTCCTCCGTCGTCACAATCTCATCGAACATTGGAACACCACGTGGATATTCGTATCGACACGAGTTATGAGAATTACCCTAAGATGCCATATTCCGATGAGGTAAAGAACAAAAATGGTGTTGTGGGTGGATGCACCATATGCTTAGGCGACTATAAAGAGAATGAGATGTTGAGGGTTCTTCCTGGTTGTGGCCATGCCTTTCACCAAGCTTGTGTTGATCCATGGCTCATGTTGCACTCCACATGTCCCATATGCCGAAAATCATTGCCTCAAGCTCCATAG 369 0.4417 MSNNSTSQSKDGFDASGFTYGVAFILAGVPPSSQSHRTLEHHVDIRIDTSYENYPKMPYSDEVKNKNGVVGGCTICLGDYKENEMLRVLPGCGHAFHQACVDPWLMLHSTCPICRKSLPQAP* 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g2301 122 CDD RING-H2_PA-TM-RING 73 115 - -
Ahy19g2301 122 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 121 IPR013083 -
Ahy19g2301 122 Pfam Ring finger domain 73 115 IPR001841 -
Ahy19g2301 122 SMART ring_2 73 114 IPR001841 -
Ahy19g2301 122 ProSiteProfiles Zinc finger RING-type profile. 73 115 IPR001841 -
Ahy19g2301 122 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 34 118 IPR045899 -
Ahy19g2301 122 SUPERFAMILY RING/U-box 55 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g2301 Ahy-Chr19 135780506 135781357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g2301 52 117 C3H Transcription Factor Family AT5G06490 47.887 8.15e-22 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g2301 - - adu:107466507 251.906