Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g2219 ATGGAGCAGGAAGAACACGAAGTGTACGGTGCCGACATCCCCGACGAAGCTGACATGGACGCCGACGCCGACCTTCAGGAACACGACGACGACCATGACAACAACCACCATGCCTCCTCTCACGCTAACAAGCAGGACTTGGAGGACATGAAGAAGAGGCTGAAGGAGATTGAGGAAGAAGCTAGCGCCCTACGTGAAATGCAGGCCAAGGTCGAGAAAGAGATGGGCGCTGTTCAAGATTCAACTGGATCTTCTGCAAGTCAAGCTGAAAAGGAGGAAGTGGATTCTCGATCAATCTATGTTGGTAATGTTGACTATGCATGCACACCTGAAGAAGTTCAACAGCATTTTCAGTCGTGTGGAACTGTGAACAGAGTTACAATATTGACAGACAAATTTGGGCAGCCAAAAGGATTTGCTTATGTAGAGTTCGTTGAGATAGATGCTGTTCAGAATGCTCTCCTGTTAAATGAATCAGAATTGCATGGTCGACAACTGAAGGTGTCTGCTAAGCGTACAAATGTTCCTGGGATGAAACAGTATTTTGGAAGACGACCTGGGGGTTTCCGATCCAGGAGGCCTTTCATGCCTGCTCCATTCTATCCACCATATGGTTATGGAAGGGTCCCAAGGTTTAGAAGACCTACTCGATACAGGCCATACTAG 666 0.4775 MEQEEHEVYGADIPDEADMDADADLQEHDDDHDNNHHASSHANKQDLEDMKKRLKEIEEEASALREMQAKVEKEMGAVQDSTGSSASQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYFGRRPGGFRSRRPFMPAPFYPPYGYGRVPRFRRPTRYRPY* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g2219 221 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 167 IPR000504 GO:0003723
Ahy19g2219 221 Gene3D - 13 179 IPR012677 -
Ahy19g2219 221 PANTHER POLYADENYLATE-BINDING PROTEIN 1-LIKE 3 220 - -
Ahy19g2219 221 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 3 220 - -
Ahy19g2219 221 MobiDBLite consensus disorder prediction 1 95 - -
Ahy19g2219 221 SMART rrm1_1 98 169 IPR000504 GO:0003723
Ahy19g2219 221 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 173 IPR000504 GO:0003723
Ahy19g2219 221 SUPERFAMILY RNA-binding domain, RBD 87 194 IPR035979 GO:0003676
Ahy19g2219 221 CDD RRM_II_PABPs 98 169 - -
Ahy19g2219 221 MobiDBLite consensus disorder prediction 28 73 - -
Ahy19g2219 221 Coils Coil 40 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g2219 Ahy-Chr19 133078252 133082085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g2219 98 169 Eukaryotic Initiation Factors Gene Family AT2G36660 38.158 6.63e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g2219 K14396 - gmx:100527545 333.569