Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g2129 ATGGATCTTGTAATGAGAAGACACATGATTTATGTGTCATTGTCAGAGTCAGAATCTATTTCTCCAAATCCAGGGACTGATCATGCGCATTCATCTTCAGGAACAAGCTTTCCAATCATAGCAATTGCCATAATAGGAATAATGGCCACAGCGTTCTTGCTAGTAAGCTACTACATCTTTGTCATCAAATGCTGCCTCAATTGGCACCGAATCGATATCTTGCGGCGGTTCTCTCCTTCCAGAAGGCGCCGCGGCGGCGACGATCCAGCCTTAGCAGTATACTCAAGCGGAATACAAGCAGAGCCTCGGGGGCTGGACGAGGCGGTTATAAGGCTAATTCCGGTGATTGGATACAAGAATTCGCAGCACAGCAGCTGCGAATGCGCGGTTTGTTTGAATGAATTTCAAGAACATGACAAGCTAAGGATTATTCCAAATTGTAGCCATGTTTTTCACATTGATTGCATTGATGTTTGGCTTCAGAACAATGCAAATTGCCCTCTTTGTAGGACAAGCATTTCTTTAACAAGTAGGTTCAGCATTCATCAGCTTCTAACGCCTCCAACAACTTCTTCTTCTCCTCCTCCTTCTTCTTCTTCTTCATCTTCATCACCACAACAATTGATTGAAGATGAAGACTTTGTTGTTATTGAATTGGGTGATGAGCGTGTTCGTGGTTTGGAATCATCACCATTACCAAGAACATGTTCTGTTGTTAGTTCTTCACCAAGGAAGAAAGGAATGAAGCTGAAGAAAGTGACAAGCATGGGGGATGAGTGCATTGACATGAGAGGCAATAAAGATGAGAACTTTTCAGTGCAACCAATCAGAAGATCTTTCTCTATGGATTCTTCAGGGGATAGGAAATTCTATTTGGCAGTTCAAGAAGCTTTGAAGCAGCAGCAACAACAACAGCAGCAGCAGCACAACAACACCATTGAAGGCTGCAGTGGTGGAAGTGCAAGTGGAAGAGCTAAGAGATCATTCTTTTCATTTGGATATGGAAGTGGCAGATCCAGAAGTTCCGTGCTACCTGTTCTTTTGGACTCATAA 1053 0.4321 MDLVMRRHMIYVSLSESESISPNPGTDHAHSSSGTSFPIIAIAIIGIMATAFLLVSYYIFVIKCCLNWHRIDILRRFSPSRRRRGGDDPALAVYSSGIQAEPRGLDEAVIRLIPVIGYKNSQHSSCECAVCLNEFQEHDKLRIIPNCSHVFHIDCIDVWLQNNANCPLCRTSISLTSRFSIHQLLTPPTTSSSPPPSSSSSSSSPQQLIEDEDFVVIELGDERVRGLESSPLPRTCSVVSSSPRKKGMKLKKVTSMGDECIDMRGNKDENFSVQPIRRSFSMDSSGDRKFYLAVQEALKQQQQQQQQQHNNTIEGCSGGSASGRAKRSFFSFGYGSGRSRSSVLPVLLDS* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g2129 350 SMART ring_2 128 169 IPR001841 -
Ahy19g2129 350 MobiDBLite consensus disorder prediction 302 322 - -
Ahy19g2129 350 PANTHER RING-H2 FINGER PROTEIN ATL16 25 348 - -
Ahy19g2129 350 Pfam Ring finger domain 127 170 IPR001841 -
Ahy19g2129 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 175 IPR013083 -
Ahy19g2129 350 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
Ahy19g2129 350 MobiDBLite consensus disorder prediction 186 207 - -
Ahy19g2129 350 SUPERFAMILY RING/U-box 119 176 - -
Ahy19g2129 350 CDD RING-H2_PA-TM-RING 127 170 - -
Ahy19g2129 350 MobiDBLite consensus disorder prediction 302 318 - -
Ahy19g2129 350 PANTHER RING-H2 FINGER PROTEIN ATL16 25 348 IPR044600 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g2129 Ahy-Chr19 128170843 128172585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g2129 31 349 C3H Transcription Factor Family AT1G04360 49.860 8.76e-96 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g2129 - - gmx:100794749 360.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g2129 19 128170843 128172585 Ahy19g2129 19 128170843 128172585 ECH
Ahy19g2129 19 128170843 128172585 Ahy9g1725 9 97891058 97892864 hybridization