Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g2117 ATGGATTCCACTTCTCACTTCTTCAACTCTCCCACCTCCGATAACTCGTCCTCCTCCTCTTTCGGCTCCTTTAGCAACTCCTCAGAGTCATTCTCGTGGAATGGATACCTTCCGTTCAACGAGAACGACCCTGAGGAGATGCTCCTCTATGGCATGATTGCCACCGCCGACACCCCTCGCCAGGGGCCCTTGGAGAGGGTAAAGGAGGAGGAGGTTAGCTCCGAGGAAAATGCTGGCGATTGTGCCGCAACAGAAAAGAAGGAGAAGTCGTACAGAGGTGTCAGGAGAAGACCGTGGGGAAAGTTTGCGGCCGAGATAAGAGACTCAACTCGGCACGGCATAAGGGTGTGGTTGGGGACATTCGACAGCGCGGAAGCAGCGGCTATGGCTTATGATCAAGCCGCTTTTTCGATGAGGGGAACGGCGGCGATCCTTAATTTCCCGGTGGAGACGGTGAAGCAGTCGCTTAGGGAGATGAACTATGGTGGTGATGGAGAAGAAGGGTGCTCCCCTGTTGTAGCCTTGAAGAGGAAGCACTCATTGAGGAGGAAAATTGGTATTAAGAAGAACAACAACAATGTTAAGGACAGGGACAATGTTGACGATAATCTTAGGTTAGATAATGCAGTGGTGTTTGAGGATCTTGGTGCTGATTACTTGGAACAATTGTTGATGTCATCTGATCAGATACCTAATCCTTGGTGA 705 0.505 MDSTSHFFNSPTSDNSSSSSFGSFSNSSESFSWNGYLPFNENDPEEMLLYGMIATADTPRQGPLERVKEEEVSSEENAGDCAATEKKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAAMAYDQAAFSMRGTAAILNFPVETVKQSLREMNYGGDGEEGCSPVVALKRKHSLRRKIGIKKNNNNVKDRDNVDDNLRLDNAVVFEDLGADYLEQLLMSSDQIPNPW* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g2117 234 CDD AP2 89 149 IPR001471 GO:0003700|GO:0006355
Ahy19g2117 234 PRINTS Ethylene responsive element binding protein signature 114 130 IPR001471 GO:0003700|GO:0006355
Ahy19g2117 234 PRINTS Ethylene responsive element binding protein signature 91 102 IPR001471 GO:0003700|GO:0006355
Ahy19g2117 234 SMART rav1_2 90 154 IPR001471 GO:0003700|GO:0006355
Ahy19g2117 234 Gene3D AP2/ERF domain 89 150 IPR036955 GO:0003700|GO:0006355
Ahy19g2117 234 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 32 226 - -
Ahy19g2117 234 ProSiteProfiles AP2/ERF domain profile. 90 148 IPR001471 GO:0003700|GO:0006355
Ahy19g2117 234 MobiDBLite consensus disorder prediction 62 85 - -
Ahy19g2117 234 MobiDBLite consensus disorder prediction 60 85 - -
Ahy19g2117 234 Pfam AP2 domain 90 140 IPR001471 GO:0003700|GO:0006355
Ahy19g2117 234 PANTHER DNA-BINDING DOMAIN 32 226 IPR044808 GO:0003700|GO:0009873
Ahy19g2117 234 SUPERFAMILY DNA-binding domain 90 150 IPR016177 GO:0003677
Ahy19g2117 234 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g2117 Ahy-Chr19 127144365 127145440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g2117 37 228 AP2-EREBP Transcription Factor Family AT3G23240 59.375 7.92e-72 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy19g2117 AP2 1.10E-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g2117 K14516 - gmx:100804481 249.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g2117 19 127144365 127145440 Ahy19g2117 19 127144365 127145440 ECH
Ahy19g2117 19 127144365 127145440 Ahy9g1717 9 97215281 97216401 hybridization