Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g2110 ATGTGTTTTGGAACCATTGAAGATGCAAATCGATTTTATCAAAATTATGCCAAGCGCGTTGGTTTTGTTACTAAGATAAGGTTTATCCGAAGAGTTGGTAAAGATAAGGTTCCTAAGAATCAAATGATCACTTGCAATAGGGAGGGAAAACACAAGTCTATAGTTTCACCAATAGAAAAGACCAACCCTAGAACCAACTACAATTGCCCCGCAAGGATTTCTATTAGGTTGAATAAGGAGGGTCTTTGGATTATATCGAAGAGAGATGAGTATGTGTGTCGAGTCATTGAGAGGAATGATGAAGTAGGTGTGAGACCAAGCAAAACATATCAAGTATTGGTGGGTGAAGCGGGGGGTTTCTCTAAGATAAACTTAATGGAAAAAGATGTTAGGAACTATCTCATCAGAAAGGTACGCAATGTTACGAAAGAAATGGATGCTAGGGAGATGTTGAAGGATTTTACACGGATGAAGGATATGAACTCTGATTTTTATTTTGATGTTGAACTTGATCAAAACAAGCGTCTCAAAACTATATTTTGGGCTGATGCTCGAAGTAGAGCAGCATATGAGTACTTTGGTGATGTAGTTTCATTTGATACTACTTATAAAACCAATCGTTACGATATGCCATTTGGTTCCTTTGTGGGGGTTAATCACCATGAAAAGCAATTTCAAGGTGCCTATACTAATGCAAAGTTTAAGGAAGTACAAAAACAATTTAGAAAGAAAGCAAATTGTATTTTGCACCTTATGAAAGCAGTTTCTACATCTAAAGTCTATTCTATTTTGGAGGATGTATCTACTTCTAAAGAGAGGGTTTATGAAGTTAACTACAATGCGGAAACGAAGGATATTACATGCAAGTGTCAAATGTTTAAATCAAGAAGCATATTATGCCGTCATATATTGGTTGTCCTAGGGCATGAACACATGAGAAAAATTCCAAGAAGATATATTTTGGACCGTTGGAGCAAACTTGTGAAGCGAAGACATAATGATATTAAGAGCAGCCATGATCCAAGTTTGTTGAATCCAAAAACAGAGAGGTTTGATGATTTATGCTCCCATTCAAATAGTGTTGCTCAATTTGCATCCCAAACAAAGGAAACAAGTGATATCTTACATCGTTATCTTGATATGGCTATGGCGGAGTGTCAAAAGTATGTTGCTAACTCATCATCTAATGCCAATGAGTTAGATAATTTATGCTTACAGTAG 1221 0.3628 MCFGTIEDANRFYQNYAKRVGFVTKIRFIRRVGKDKVPKNQMITCNREGKHKSIVSPIEKTNPRTNYNCPARISIRLNKEGLWIISKRDEYVCRVIERNDEVGVRPSKTYQVLVGEAGGFSKINLMEKDVRNYLIRKVRNVTKEMDAREMLKDFTRMKDMNSDFYFDVELDQNKRLKTIFWADARSRAAYEYFGDVVSFDTTYKTNRYDMPFGSFVGVNHHEKQFQGAYTNAKFKEVQKQFRKKANCILHLMKAVSTSKVYSILEDVSTSKERVYEVNYNAETKDITCKCQMFKSRSILCRHILVVLGHEHMRKIPRRYILDRWSKLVKRRHNDIKSSHDPSLLNPKTERFDDLCSHSNSVAQFASQTKETSDILHRYLDMAMAECQKYVANSSSNANELDNLCLQ* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g2110 406 ProSiteProfiles Zinc finger SWIM-type profile. 275 311 IPR007527 GO:0008270
Ahy19g2110 406 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 222 397 - -
Ahy19g2110 406 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 1 221 - -
Ahy19g2110 406 SMART 26again6 286 313 IPR006564 GO:0008270
Ahy19g2110 406 Pfam SWIM zinc finger 275 308 IPR007527 GO:0008270
Ahy19g2110 406 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 222 397 IPR031052 GO:0006355
Ahy19g2110 406 Pfam FAR1 DNA-binding domain 11 87 IPR004330 -
Ahy19g2110 406 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 1 221 IPR031052 GO:0006355
Ahy19g2110 406 Pfam MULE transposase domain 196 266 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g2110 Ahy-Chr19 126267515 126269664 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Ahy19g2110 MULE 4.30E-07 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g2110 - - ahf:112778718 828.165