Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g2102 ATGGCATTTCTTACAGCCATTGCTACCTCACAGTCTGTGTCGTCACGGTGCTTGGTCTCCCTCTTCTCTTCGTCTACGTTCTCAGACTATAGAATGACACATGATAGCAAAATTGAAACCAATTGGAATTTGTGTATAAATTGTTGCTGTTGTTTTAATGATTTAGGTGGAAGACTATTGATTGTTAACAAGGCTTTTCCAGGAGGAGAGCGACCTGAATGCCCACCCCGTTCATTCGAACAGGCTTTTAGAATCTATGTTGGTAACTTGTCTTGGGATGTTGACAATGGTTGCCTAGAGCAGATTTTCAGCGAATACGGTAAGGTTGTGAATGCCCGCGCAGCATATGACAGAAAGATTGAACAATCATGCGGCTTTGGTTTTGTCACAATAACCGATGATATTGAAATGAACGACGCAATTGCTGCTCTTGATGGCCAGAGTTTGGATGGAAGGGAAATAAGAGTGAATGTTGCTGAGGACATACCCAAACGCTCTTTTTGA 504 0.4246 MAFLTAIATSQSVSSRCLVSLFSSSTFSDYRMTHDSKIETNWNLCINCCCCFNDLGGRLLIVNKAFPGGERPECPPRSFEQAFRIYVGNLSWDVDNGCLEQIFSEYGKVVNARAAYDRKIEQSCGFGFVTITDDIEMNDAIAALDGQSLDGREIRVNVAEDIPKRSF* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g2102 167 Gene3D - 54 166 IPR012677 -
Ahy19g2102 167 PANTHER RIBONUCLEOPROTEIN 54 166 - -
Ahy19g2102 167 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 83 161 IPR000504 GO:0003723
Ahy19g2102 167 SMART rrm1_1 84 157 IPR000504 GO:0003723
Ahy19g2102 167 PANTHER OS02G0815200 PROTEIN 54 166 - -
Ahy19g2102 167 SUPERFAMILY RNA-binding domain, RBD 75 164 IPR035979 GO:0003676
Ahy19g2102 167 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 85 155 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g2102 Ahy-Chr19 125978735 125981104 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g2102 11 160 Eukaryotic Initiation Factors Gene Family AT3G16380 30.409 2.68e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g2102 - - ahf:112778713 339.732