Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g2056 ATGGCGAACCACACTGTTATATTGAAAAAGACTACAATTCTACCATTTTTAACTTGCAAGATTTGTGATGAATTGTTGGAGGATGCTACTGCTATTGTTGAATGTCTTCATTTATTTTGCAAGAAGTGCATCCATCACAAAATTATTGAAGAGGAATTAGAACATTGTCCAGTGTGTGATCTAGATTTGGGACCTAAACCTCTCGAGAAATTGAGGCATGACGAAAGTATGCAATCAATAAGAAACACAATATTTCCTCCAAGAAAAGAAAATGTTGTTAATAAGGCGGATGATGATGTTGCCAATGCTGAGAAGAATGAGTTATTAGGTGACCTTGGCATAATTTTGTTTGAAGATCCTGAGAATGAAAAAGATGTGGCATTAAAAGATTTGCTAGATACTTCAAAAGAACATGTAGAAAATATCAAAGAGAGTTTGCTACCTTCTGAAAAGAGTCATTGCATGGAAAACAAAAATGTTAAGGGTAAAAGTATTTGTCTTGATAATGTGGAAGAATACAATACTGATGAAATTTTACAAATAGAAGATAATAACAATGGCTCTCAAGTGGAAAAATCTAGACAGAAGAAAAAGAAGCACAAGAAAAAAACCAAAAACATCGCTGAAATTTACCAAAAACATGAAACAATTATTATTTCTGGAGAATCAACTGAATATTTACCTTTAGCTTTGGAAGATTTTGATCAAGTTAACATTTTAAGGGATAATTCTTCATTTTGGATATGCTTAGAAGCTTCAGAAAAACAGTGA 771 0.3217 MANHTVILKKTTILPFLTCKICDELLEDATAIVECLHLFCKKCIHHKIIEEELEHCPVCDLDLGPKPLEKLRHDESMQSIRNTIFPPRKENVVNKADDDVANAEKNELLGDLGIILFEDPENEKDVALKDLLDTSKEHVENIKESLLPSEKSHCMENKNVKGKSICLDNVEEYNTDEILQIEDNNNGSQVEKSRQKKKKHKKKTKNIAEIYQKHETIIISGESTEYLPLALEDFDQVNILRDNSSFWICLEASEKQ* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g2056 256 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Ahy19g2056 256 SMART ring_2 19 59 IPR001841 -
Ahy19g2056 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 109 IPR013083 -
Ahy19g2056 256 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Ahy19g2056 256 SUPERFAMILY RING/U-box 13 73 - -
Ahy19g2056 256 MobiDBLite consensus disorder prediction 184 205 - -
Ahy19g2056 256 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 6 205 IPR044807 GO:0004842
Ahy19g2056 256 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g2056 Ahy-Chr19 123552449 123555873 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g2056 8 86 C3H Transcription Factor Family AT2G30580 56.962 4.26e-28 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g2056 K16277 - ahf:114925965 494.197