Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g2023 ATGGTGAGAGCTCCTTGTTGTGAAAAGATGGGATTGAAGAAGGGTCCATGGACGGCAGAGGAAGATCAAATCCTCATTTCTTACATCCAAAAACATGGCCATGGCAATTGGCGTGCCCTCCCAAAGCAAGCAGGGCTGTTAAGGTGTGGAAAGAGCTGCAGATTAAGGTGGATAAATTATCTGAGGCCTGATATCAAGAGAGGGAATTTCACCATTGAAGAAGAAGAAACCATCATCAAGCTTCATGAAATGCTTGGCAACAGGTGGTCGGCAATTGCGGCAAAATTACCCGGAAGAACAGACAACGAAATCAAGAATGTGTGGCACACACATTTGAAGAAGAGGCTCATGAAACCAAACCAAATGAATTCATCATCATCATCAGATCCCAAAAGGGTATCTAATAAGTCAAAGATCAAACGTTCTGATTCAAACTCAAGCACCATAACTGTTCAATCATCGGAACCAGCAAGTCTCAATAGTAATTTCCCTGAAATGGACACAACTTCAGCATCATGCACCACCACTACAACAACAACCTCTAGTGAATTCTCATCAGCCACAAATATTGGTGAAAGCAAGAACGTGAACATGATGAACATCAAGAATGAGGAGCTAGGAGATTCATTGGAGAACATAATTGATGAAAGCTTATGGACAGAGGCAGGAATTGATGATGAAACCACCAACATGACAATCTCAAATAATGAGTTGCCCTCACTTCAATATTATGACCCAGTATTTAATAATTCTGAGGAGAATTTAAGCTTCCAACCAAGTACAAACTTTGAGGATGATGGCATGGATTTTTGGTATGACATATTCATTAGAACTGGGGAGTCAATAGAATTGCCAGAGTTCTGA 864 0.4086 MVRAPCCEKMGLKKGPWTAEEDQILISYIQKHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTIEEEETIIKLHEMLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLMKPNQMNSSSSSDPKRVSNKSKIKRSDSNSSTITVQSSEPASLNSNFPEMDTTSASCTTTTTTTSSEFSSATNIGESKNVNMMNIKNEELGDSLENIIDESLWTEAGIDDETTNMTISNNELPSLQYYDPVFNNSEENLSFQPSTNFEDDGMDFWYDIFIRTGESIELPEF* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g2023 287 CDD SANT 69 112 IPR001005 -
Ahy19g2023 287 MobiDBLite consensus disorder prediction 113 186 - -
Ahy19g2023 287 CDD SANT 16 61 IPR001005 -
Ahy19g2023 287 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ahy19g2023 287 Gene3D - 13 66 - -
Ahy19g2023 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Ahy19g2023 287 MobiDBLite consensus disorder prediction 140 186 - -
Ahy19g2023 287 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Ahy19g2023 287 MobiDBLite consensus disorder prediction 117 132 - -
Ahy19g2023 287 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ahy19g2023 287 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Ahy19g2023 287 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ahy19g2023 287 Gene3D - 68 145 - -
Ahy19g2023 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Ahy19g2023 287 SMART sant 66 114 IPR001005 -
Ahy19g2023 287 SMART sant 13 63 IPR001005 -
Ahy19g2023 287 PANTHER MYB15 1 279 - -
Ahy19g2023 287 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g2023 Ahy-Chr19 121330833 121333515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g2023 1 287 MYB Transcription Factor Family AT2G31180 46.552 1.13e-81 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ahy19g2023 Myb_DNA-binding 1.60E-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g2023 K09422 - gmx:100807569 350.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g2023 19 121330833 121333515 Ahy19g2023 19 121330833 121333515 ECH
Ahy19g2023 19 121330833 121333515 Ahy9g1637 9 91144206 91146839 hybridization