Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g1992 ATGCTTTTGTTTGCGTCCTTGTCAGATATAGACATATACATACATACATACAAATACATACGTATATATATATATACAGAAAACAAAAGAATGACGGGGCAAGCGGTGAAGCTGAATAGAGCCAAGCTTGAGGCATGCTTAACATGTCCTTTGTGCAATAAATTGTTCAACAATGCCACCACCATTTCAGAATGCTTACACACTTTTTGCAGGGGATGCATAGATAAGAAGCTAATAGATGAGCAATTAAAGCACTGTCCAGTATGCAATGCTGACTTGGGTTGTTCTCCACTTGATAAATTAAGGACAGATCATAGTTTACAAGATTTGAGGAACAAAATTTTGCCTGAAGAAGGAAAAAAAATTGGCAAGACACCTAAGAATTGTGTGAAAAGAAAGAAGAAATCTCTGTCTTCTCTAGAAGCCAACGCAACAGGAGCAAAAGCTGCTACTCCTGAGAGAGAAGTTTCCGCGCCTTCGCAACCGGATTGTTCTTCTCCTAAGCCTGAAAAGGTGGAGGAAGATGTCAGAAAAGACGAGAAACAACCGCGGAGGATAGGAATCTTGGATGAAGTCTCTACAAAGTTAACTGCAAGAAGAGCTAAAGTTGTAGCAAGAAAAAAGTACCTTCTGAAAGAGTTAACATCATCTTGTGAACCGGATAAAGTAACCGGAGATCAGAGGAAAGAAAATGATGACCGGTTTCAGCTTGAAATTTCCAATGACAGTTCCAAAGCCAGAGTTCAGAATCCTTCAAAACCAGATTCAAGTCAACAAATAGTGCCAAACAAGATTCCAATTGACAATGTTGAATCATGGCAAGAAGCTCTTGATTTGTGTGAGCCATTAAATTCCATTGTAGAAGCTGCAAGGAAGAACAAATCTTGCAGTAAGTCCACTATGCAAGAACATGCTGTCATTCCATCAGTAAAGTCAAGTGACAATGATGGCCAGCCTAAGGTTGAAAATGGTGATGAGAATGAATCGAATCGTTCGAGATCATCGGATACAAAAGGAAGAAAACTCAAATTCTCTGAGGACTTGAATGTTCCAGTACAGCAGCAAGTGATTACTTCAAATGGTGAAAGCAACAGAGGGTTTGGTCCAGTTTGGTTCTCCTTGGTTGCTTCTGAAGTGAATGAAGAAAGTGCAAAATTGCCAAAAATAACCCCCAGCTACTTAAGGGTCAAGGATGGTAGTTTACTTGTTTCCCATATCAAAATGTATATAGTGAAGAAGCTTGGTCTTGTTAGCGAATCCGAGGTGGAGATCTCGTTGCAAGGTAAACCGGTTCTACCTTGCATGCAACTGCAAAACTTGGTAGAGTTGTGGCTGCAAACAAAGCCATTGAATGAGAAGATTCAAACACATGTTGGAAGCTCAGCTAAGGATTTTGTTATGGTCCTTTCATATCATCGAAAGTCTTGA 1428 0.3985 MLLFASLSDIDIYIHTYKYIRIYIYTENKRMTGQAVKLNRAKLEACLTCPLCNKLFNNATTISECLHTFCRGCIDKKLIDEQLKHCPVCNADLGCSPLDKLRTDHSLQDLRNKILPEEGKKIGKTPKNCVKRKKKSLSSLEANATGAKAATPEREVSAPSQPDCSSPKPEKVEEDVRKDEKQPRRIGILDEVSTKLTARRAKVVARKKYLLKELTSSCEPDKVTGDQRKENDDRFQLEISNDSSKARVQNPSKPDSSQQIVPNKIPIDNVESWQEALDLCEPLNSIVEAARKNKSCSKSTMQEHAVIPSVKSSDNDGQPKVENGDENESNRSRSSDTKGRKLKFSEDLNVPVQQQVITSNGESNRGFGPVWFSLVASEVNEESAKLPKITPSYLRVKDGSLLVSHIKMYIVKKLGLVSESEVEISLQGKPVLPCMQLQNLVELWLQTKPLNEKIQTHVGSSAKDFVMVLSYHRKS* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g1992 475 MobiDBLite consensus disorder prediction 295 317 - -
Ahy19g1992 475 MobiDBLite consensus disorder prediction 295 344 - -
Ahy19g1992 475 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 140 IPR013083 -
Ahy19g1992 475 SUPERFAMILY RING/U-box 43 116 - -
Ahy19g1992 475 MobiDBLite consensus disorder prediction 239 263 - -
Ahy19g1992 475 MobiDBLite consensus disorder prediction 318 344 - -
Ahy19g1992 475 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIPH-RELATED 35 474 - -
Ahy19g1992 475 SMART ring_2 49 89 IPR001841 -
Ahy19g1992 475 ProSitePatterns Zinc finger RING-type signature. 65 74 IPR017907 -
Ahy19g1992 475 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 35 474 IPR044807 GO:0004842
Ahy19g1992 475 ProSiteProfiles Zinc finger RING-type profile. 49 90 IPR001841 -
Ahy19g1992 475 MobiDBLite consensus disorder prediction 241 263 - -
Ahy19g1992 475 MobiDBLite consensus disorder prediction 120 182 - -
Ahy19g1992 475 Pfam Zinc finger, C3HC4 type (RING finger) 49 89 - -
Ahy19g1992 475 MobiDBLite consensus disorder prediction 167 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g1992 Ahy-Chr19 118115352 118119254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g1992 31 397 C3H Transcription Factor Family AT2G30580 32.051 9.40e-37 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g1992 K16277 - pop:7474161 308.145
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g1992 19 118115352 118119254 Ahy19g1992 19 118115352 118119254 ECH
Ahy19g1992 19 118115352 118119254 Ahy9g1621 9 89430385 89434259 hybridization