Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g1986 ATGGCAACTATGTTGGCAAAGGAGCATGGCTTGAATCTGAAGGAGACTGAGCTTTGCCTTGGCCTGCCCGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGACACGGCAACGGCAGAAACTCCGAGAGCCACCGGGAAGAGAGGGTTCTCTGAGACGGTTGATCTGAAGCTTAACCTTCAAGGCAATGATACTAACAAGGAAGATCTGAATGAGAATCTGAAGAATGTTCCAAAGGAGAAGACTCTCCTTAAGGACCCTGCCAAGCCACCCGCTAAAGCTCAAGTAGTTGGATGGCCACCAGTGAGGTCATACAGAAAGAACATGATGGCACAAAAGGTGAGCACTGAGGAAAATAACAATGGCAGCGCCACCACTGAGAAGACAACAAGCAGCGCCGCCGCTGCAGCCACCACCGCAGCTTCTACTGGTGGTTCATTTGTGAAGGTCTCCATGGATGGAGCTCCTTACCTTCGCAAGGTCGACCTGACAATGTACAAAAGCTACCAAGACTTATCTGATGCCTTGGCCAAAATGTTCAGCTCCTTCACCATGGGTAACTATGGGTCCCAAGGAATGATTGATTTCATGAATGAGAGCAAGTTGATGGATCTTCTGAACAGCTCTGAGTATGTGCCAACCTATGAAGATAAGGATGGTGACTGGATGCTCGTGGGTGATGTCCCATGGGAGATGTTTGTTGGATCATGCAAGCGTCTGCGAATAATGAAAGGATCAGAAGCTATTGGGCTTGCGCCGAGGGCCATGGAGAAATGCAAAAGCAGAAGCTGA 789 0.5057 MATMLAKEHGLNLKETELCLGLPGGGGGGGGGGDTATAETPRATGKRGFSETVDLKLNLQGNDTNKEDLNENLKNVPKEKTLLKDPAKPPAKAQVVGWPPVRSYRKNMMAQKVSTEENNNGSATTEKTTSSAAAAATTAASTGGSFVKVSMDGAPYLRKVDLTMYKSYQDLSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVGSCKRLRIMKGSEAIGLAPRAMEKCKSRS* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g1986 262 Pfam AUX/IAA family 16 253 IPR033389 -
Ahy19g1986 262 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 255 IPR003311 GO:0005634|GO:0006355
Ahy19g1986 262 PANTHER AUXIN-RESPONSIVE PROTEIN IAA7 7 255 - -
Ahy19g1986 262 SUPERFAMILY CAD & PB1 domains 141 243 - -
Ahy19g1986 262 MobiDBLite consensus disorder prediction 20 49 - -
Ahy19g1986 262 Gene3D - 139 256 - -
Ahy19g1986 262 ProSiteProfiles PB1 domain profile. 144 244 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g1986 Ahy-Chr19 117929305 117931993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g1986 121 247 B3 DNA Binding Superfamily AT3G61830 29.921 1.24e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Ahy19g1986 AUX_IAA 1.20E-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g1986 K14484 - gmx:100810762 399.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g1986 19 117929305 117931993 Ahy19g1986 19 117929305 117931993 ECH
Ahy19g1986 19 117929305 117931993 Ahy9g1617 9 88861231 88864061 hybridization