Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g1967 ATGGTAGGACTTGAGATCATACCAATAGGCACAATTTTGGCAGTGCTAACCAACCAGGTCTTGAAAACGGCTCATGCAGCGGCCGATGTTCTTATAGGCAAAGAAAGTTTCAAAATCCTCTCAAAACACCTCTTTGATATTGAGCCTGTTCTGAAGGAACTACAGCTTCAAGAGCTCAATGAATCTCAAGCTGCAAGGGCTGCTTTGGAATCACTAGAATCAGATGTCAAAAGGGCTAACAATTTGGTCGAAAAGTACAGGAACCGTGGCAGATTCTATCTTCTGGTTAAGTGCAGATACATAGTTGGGGAGGTTGAGCAAGTCACAAGAGATATTGGCAAGTCTCTGGCTGCACTTTCGCTTGCGAATACTGAAGTCCTAACAAGAATCTCTGATCAGGTTGACAGGCTGCAGAATGAGATGCAGAGAGTGGAGTTTGAGGCTTCGCGGTCGCAGCTTCAGATTGTTGAGAAGTTAGATTATGCACTTAGAGAACAGAAACTCGATCAGGCTTTCGCAAATGACATGCTTGAGGAAATAGCAAGAGCCGTTGGCGTGCCAGTGGAGCCTTCAGAGATAAGCAAAGAATTAGCCAGCATTAGGAAGGAGAAAGAAGAAGCTGCAAGCCGGAAAGAGCGAGCCGAGTACATTTTCTTGGAGCAGATCATTGAGTTACTCTCTAGAGCTGATGCAGCAAGGGACTATGAAGGAGTGAAGAAACAATACTTTGAAAGAGTTCAAGTCATAGAAAGATATGATTCAAGGGAAACTTATATCTTACCACTCAATCCTTTCCTCTGCTCGATAACCGGCGTGGTTATGGTTGATCCTGTTAGCCTTTGTACTGGTACTACATGTGAGAGATCTGCCATTGAAGATTGGTTTCACAATGGGAACCGAACGGATCCAGAAACAAACGAGGTTCTTGAAGAAACTACCCTGAGGTCTAACATTCCACTAAGACAATCCATAGAAGAATGGAGAGAACTTAATTATTGTCTTGTTATAAGGTCTATCAAGGAAAATCTGATCACAAATTATGAAGTGCACGAGTCTTTGAGCCTAATTCAGGCCCTTATGAGAGAAAATTCTATTAACAAGGATTGGATTTCTATTGGAGGGGTAACGGATGTTGTTATCTCTATCCTTGGAAACTCTAATTATAAAGAAGCCAAGTTGAGGATTCTGATTACTCTGAAGGATGTTGTAGAGGGACATGCAAGAAACAAGGAGAAAGTGGCTGAATCTCAAGGATGGGATCAGATTATTTGTTGCTTAGGGGGTGATTCTAGCACTTCAAAGGCAGCAATCGATCTGCTGTACGAGTTGCTTCAAGGGCGGTCCGGCTGGAACAAAAGCTTTTGCAAAAAACTCTCTGAGAATCAGAATGCAATTCCTTTCCTTGTTACCTTTCTAAAGGGATCAGACAACGATCCAGCCGAGGCAGCAGAAAAGATTTTGATGGAAGTTTTCAAAATAAATGAGGAAAGTATTACAACTGCTGCTAGATTTGGCTGGTATAAACCCCTCGTTGATCGCATGATTCAAGAACCAGATTCGAGACTAGGAATGGCGAAAGGCATAGTAAGCTTGGAGTTAAACCTGTTAGAGTTGAAAGAACTTGGTGAGGAAGGTGTTATACCTCCTCTTCTAGAAATGCTATCTGGAAGCATTGAATCAAAGGACTTGTCACTATCAGCACTGGTTAAACTAGCAGGATGTCCTCCAAACAAGAGAATAATCGCAGAATCTGGAGGTGTTCCTTTGATTCTAGATCTAACATTCTCAACGCGGATGAGGACATTCATTACTATCAAATGCTGCGAAATCCTGGAGAAGCTTTCCTTTGATGAAGATGGAATAGACTTGTTTGTTGACAGAGAAGGGAATCAACTTGAGTTAGATTCCATCATCACCAATTTGCTAGCATTGCAGCAGAGTTTCAACACTGGATACAATTTTCGCAAGCCTGCGCTGCGCGCTCTTTTAGGCATTTGCAAGTTTGAGACTGATTTAATTAAGAAGGCAATTCTTGCAGCCAATAGTGTGTCTCTAATTCTTCCACTTCTTGATGACTCTGATTCAGAAATCCGAGAAACTGCAATAAACTTGCTCTTTCTATTCTCCCAGCACGAGCCGGATGGAGTAGTTGAGTATCTCTTCAGGCCTAGAAGGCTAGAAGCCTTGATTGGTTTTCTTGAGAATGATGAGAATGACAATGTGAGGATGGCTGCGGCCGGATTACTCGCAAACCTTCCTAAATCAGAAAGAGAACTCACTATGAAGTTGATTGAATTAGGTGGACTTGATGCTATAATAAGCATATTGAGAACTGGTACAATGGAAGCCAAGGAAAATGCTCTGAGTGCACTCTTTAGATTCACTGATCCTACAAATATTGAGTCGCAGCGCGATCTTGTTAAACGAGGGATATATCCTCTACTTGTCAACTTTCTCAACACTGGTTCCGTCACAGCAAAGGCAAGAGCAGCAGCATTCATTGCTGATCTATCAATGAGCACTCCAAAGCTCACAATTGTTTCTAAATCGCCCGGCTGCTGGTTTTTCAAGTCATCACGAGTTCCCTTATGCTTGGCGCATGGAAGCATATGCAGTGTTGCCACCACATTCTGCCTTATTGAAGCAAATGCCTTACCTGGATTGATCAAATTACTGCATGGAGAGGTTCATGCTACTGCTTATGAAGCAATTCAAACACTTTCCACATTGGTTTTGGAGGATTTTCCTCAGAGAGGAGCCATAGTCCTGCATAAGAACAATGCAATAACACCCTTGTTGGAGATTCTGAATTGGGGTTCTGATTATCTCAAAGCTGAAGCTCTAGGATTATTAGAAAAGGTCTTTGTGTCAAAGGAAATGGTGGAGTATTATGGAACAACAGCCAGGTTGAGGCTAATTGGAATCACTGGCATGAATATCTATGGAGATGGCCACCTTAGAAGGAAGGCTGCTAAGGTACTATCTTTGCTCGAGCGATATTCGAGATCATCGTCCTCTGCAATCTCCGGTGTTCCGGAGTGA 3042 0.4257 MVGLEIIPIGTILAVLTNQVLKTAHAAADVLIGKESFKILSKHLFDIEPVLKELQLQELNESQAARAALESLESDVKRANNLVEKYRNRGRFYLLVKCRYIVGEVEQVTRDIGKSLAALSLANTEVLTRISDQVDRLQNEMQRVEFEASRSQLQIVEKLDYALREQKLDQAFANDMLEEIARAVGVPVEPSEISKELASIRKEKEEAASRKERAEYIFLEQIIELLSRADAARDYEGVKKQYFERVQVIERYDSRETYILPLNPFLCSITGVVMVDPVSLCTGTTCERSAIEDWFHNGNRTDPETNEVLEETTLRSNIPLRQSIEEWRELNYCLVIRSIKENLITNYEVHESLSLIQALMRENSINKDWISIGGVTDVVISILGNSNYKEAKLRILITLKDVVEGHARNKEKVAESQGWDQIICCLGGDSSTSKAAIDLLYELLQGRSGWNKSFCKKLSENQNAIPFLVTFLKGSDNDPAEAAEKILMEVFKINEESITTAARFGWYKPLVDRMIQEPDSRLGMAKGIVSLELNLLELKELGEEGVIPPLLEMLSGSIESKDLSLSALVKLAGCPPNKRIIAESGGVPLILDLTFSTRMRTFITIKCCEILEKLSFDEDGIDLFVDREGNQLELDSIITNLLALQQSFNTGYNFRKPALRALLGICKFETDLIKKAILAANSVSLILPLLDDSDSEIRETAINLLFLFSQHEPDGVVEYLFRPRRLEALIGFLENDENDNVRMAAAGLLANLPKSERELTMKLIELGGLDAIISILRTGTMEAKENALSALFRFTDPTNIESQRDLVKRGIYPLLVNFLNTGSVTAKARAAAFIADLSMSTPKLTIVSKSPGCWFFKSSRVPLCLAHGSICSVATTFCLIEANALPGLIKLLHGEVHATAYEAIQTLSTLVLEDFPQRGAIVLHKNNAITPLLEILNWGSDYLKAEALGLLEKVFVSKEMVEYYGTTARLRLIGITGMNIYGDGHLRRKAAKVLSLLERYSRSSSSAISGVPE* 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g1967 1013 SUPERFAMILY ARM repeat 357 713 IPR016024 -
Ahy19g1967 1013 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Ahy19g1967 1013 SUPERFAMILY RING/U-box 248 330 - -
Ahy19g1967 1013 SUPERFAMILY ARM repeat 648 998 IPR016024 -
Ahy19g1967 1013 Pfam U-box domain 265 329 IPR003613 GO:0004842|GO:0016567
Ahy19g1967 1013 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1010 - -
Ahy19g1967 1013 Gene3D - 8 123 IPR036537 GO:0007166
Ahy19g1967 1013 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1010 - -
Ahy19g1967 1013 SMART arm_5 670 710 IPR000225 GO:0005515
Ahy19g1967 1013 SMART arm_5 872 912 IPR000225 GO:0005515
Ahy19g1967 1013 SMART arm_5 756 796 IPR000225 GO:0005515
Ahy19g1967 1013 SMART arm_5 406 445 IPR000225 GO:0005515
Ahy19g1967 1013 SMART arm_5 713 754 IPR000225 GO:0005515
Ahy19g1967 1013 SMART arm_5 574 616 IPR000225 GO:0005515
Ahy19g1967 1013 SMART arm_5 534 573 IPR000225 GO:0005515
Ahy19g1967 1013 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Ahy19g1967 1013 Coils Coil 127 154 - -
Ahy19g1967 1013 Gene3D - 518 848 IPR011989 -
Ahy19g1967 1013 Coils Coil 62 89 - -
Ahy19g1967 1013 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 334 IPR013083 -
Ahy19g1967 1013 Gene3D - 855 1008 IPR011989 -
Ahy19g1967 1013 Gene3D - 348 517 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g1967 Ahy-Chr19 115383578 115387926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g1967 265 970 U-box Gene Family AT1G76390 27.523 1.48e-36 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g1967 - - gmx:100783638 1554.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g1967 19 115383578 115387926 Ahy19g1967 19 115383578 115387926 ECH
Ahy19g1967 19 115383578 115387926 Ahy9g1601 9 86639271 86643575 hybridization