Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g1953 ATGGCGGTGGATGCATGTCGTGAACAAACCTCTTCATGTTTGGAGAGAATCAAGAAGAGAAAAAGGGAAGAAAACAAGAAACCGTCGTTTTCATGGGGATGTTCAACTGAGCTAATGATGTATGACGATCCATGGAAGCTGAAGAAGGTGCTGAACAGCAGCGACGTGGGGAGCTTGAGTAGGCTGTTGCTTCCGAAGGAGATGGCGGAGCCGCTGGTGGCAGCGGTGTTGGGGTACGACGAGAACCAGAAAGAAGGAATGGAGGTCGAGATATGGGACGTTGACACACAGTCAATGCACAGTCTTGTGTTCAAGAGATGGGGTTCTTCTAGAAGCTATGTCTTCATGGCCAATTGGATTAAAGACTTTGTCAAAAGAAGGTCTCTCAAGTCCGGCCATGAGGTTGCCTTCCACTGGAATCCTTACGCCAACCGCTTTCATTTTTCTGTTCTCAAGGCTGCCACAGAGGAGGATTTCTCAAACTGA 486 0.4835 MAVDACREQTSSCLERIKKRKREENKKPSFSWGCSTELMMYDDPWKLKKVLNSSDVGSLSRLLLPKEMAEPLVAAVLGYDENQKEGMEVEIWDVDTQSMHSLVFKRWGSSRSYVFMANWIKDFVKRRSLKSGHEVAFHWNPYANRFHFSVLKAATEEDFSN* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g1953 161 Pfam B3 DNA binding domain 49 150 IPR003340 GO:0003677
Ahy19g1953 161 Gene3D - 44 158 IPR015300 -
Ahy19g1953 161 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 8 153 - -
Ahy19g1953 161 SUPERFAMILY DNA-binding pseudobarrel domain 43 152 IPR015300 -
Ahy19g1953 161 CDD B3_DNA 45 152 IPR003340 GO:0003677
Ahy19g1953 161 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 8 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g1953 Ahy-Chr19 114292430 114292915 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g1953 3 137 RAV Transcription Factor Family AT3G25730 29.710 2.61e-10 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy19g1953 B3 2.40E-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g1953 - - adu:107466106 302.367