Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g1938 ATGGAAGAAAAAGAGAATTTTGGTGCTGGGCATGCAGTGGTAGGTGATGCTAGTGCCCCAGAGAGCTTCCACGTGGCGCCCAGAGTTGAGACCTTAGATTTTTCCGGTGCCTCCACGCCGGTGCCAGCAACGGGGACCGATGGGAAGAAGAAGAGAGGAAGGCCTAGGAAGTATGGACCGGATGGGAAGCCAACGGCGGTGGCAGCAGCAGGGGCGCTGTCGCCGATGCCGATATCGGCATCAATTCCGTTGACGGGAGAGTTCTCAGCCTGGAAAAGGGGTAGAGGGAAGCCTGTTGAGTCCATCAAGAAGTCATCATATAAGTTTGACTTTGAAAGTCCAGGACCAGGACCAGGTGAGGGAATCCAATACTCAGTTGGTGCCAATTTTACACCACATGTACTTACTGTAAATGCTGGCGAGGATGTTACTATGAAAATTATGTCTTTTTCTCAACAAGGATCACGAGGTATATGTGTTCTCTCTGCAAATGGCACGATTTCAAATGTTACACTTCGACAACCAACATCTTCTGGGGGTACTTTAACATATGAGGGGCGATTTGAGATTCTTTCCTTGTCCGGTTCCTTTATGCCTACTGAGAATGGAGTTACAAGAAGCAGATCTGGCGGGATGAGTGTCTCTTTAGCAGGTCCAGATGGTCGAGTAATGGGAGGAGGACTCGCTGGTTTGCTGATAGCTGCAGGCCCTGTTCAGGTTGTTGTGGGCAGTTTTCTTCCTGGTCACCAGCTCGAGCATAAATCAAAGAAGCCTAGGGTGGAACATATATCAACCATCACCCCATCACACGTTACTCCCGTTGTCTCTAACGAGGAAATACGAGTCAGTTTTGGTGGAGTGAAGCCTATTATGACACCTACTGCATTTCATGGACATGGAGAGAACATTGTTTCCTTTAACAATGCTCCAGACTCTCGGAACTCATCTGCTGACAATATAGAACCTTTGCCCGAAAAGGAGTCTAACCCAAGCCATCCGAATGCGGAGGTCCCATGCTAA 1020 0.4882 MEEKENFGAGHAVVGDASAPESFHVAPRVETLDFSGASTPVPATGTDGKKKRGRPRKYGPDGKPTAVAAAGALSPMPISASIPLTGEFSAWKRGRGKPVESIKKSSYKFDFESPGPGPGEGIQYSVGANFTPHVLTVNAGEDVTMKIMSFSQQGSRGICVLSANGTISNVTLRQPTSSGGTLTYEGRFEILSLSGSFMPTENGVTRSRSGGMSVSLAGPDGRVMGGGLAGLLIAAGPVQVVVGSFLPGHQLEHKSKKPRVEHISTITPSHVTPVVSNEEIRVSFGGVKPIMTPTAFHGHGENIVSFNNAPDSRNSSADNIEPLPEKESNPSHPNAEVPC* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g1938 339 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 13 326 - -
Ahy19g1938 339 SUPERFAMILY AF0104/ALDC/Ptd012-like 129 248 - -
Ahy19g1938 339 MobiDBLite consensus disorder prediction 305 322 - -
Ahy19g1938 339 ProSiteProfiles PPC domain profile profile. 127 269 IPR005175 -
Ahy19g1938 339 CDD DUF296 131 245 IPR005175 -
Ahy19g1938 339 Gene3D - 132 262 - -
Ahy19g1938 339 Pfam Plants and Prokaryotes Conserved (PCC) domain 132 245 IPR005175 -
Ahy19g1938 339 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 13 326 IPR039605 GO:0003680
Ahy19g1938 339 MobiDBLite consensus disorder prediction 30 66 - -
Ahy19g1938 339 MobiDBLite consensus disorder prediction 302 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g1938 Ahy-Chr19 112677926 112684475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g1938 43 260 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 64.889 2.96e-90 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g1938 - - gmx:100776862 486.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g1938 19 112677926 112684475 Ahy9g1575 9 85348917 85355287 hybridization
Ahy15g3396 15 156459542 156463949 Ahy19g1938 19 112677926 112684475 PCT
Ahy5g1889 5 87085487 87089801 Ahy19g1938 19 112677926 112684475 PCT
Ahy19g1938 19 112677926 112684475 Ahy15g3396 15 156459542 156463949 PCT
Ahy19g1938 19 112677926 112684475 Ahy5g1889 5 87085487 87089801 PCT