Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g1924 ATGAGCTTTTCATCACTGCTACTACCACTTTTCTTCACTCTCATGATTCTTTTCCTCTTGAACCCAACAATGGTATATGGGAATAATGAGGAAGAAGAAGAAGAGCTACTAGCACTGATGGACATGAAGGATAGTATGGATCCATATGGTCACTACCTAACCTCATGGACCATCAATGGCAACCCATGTGATGGTGCTTCCTTTGAAGGTGTGGCCTGCAATGAAAAGGGTCAAGTTGCAAATATTTCTTTGCAGGGAAAAGGTCTCTCAGGGAAGCTTTCCCCAGCCATTGGTGGGCTCAAGCATTTGACAGGACTCTACTTGCATTATAACTCTTTGTATGGTGAGATACCAAGGGAAATTGCAAACTTGACTCAGCTTAGTGATTTGTACCTGAATGTGAATCATCTTTCTGGGAAAATCCCAACGGAGATTGCCAACATGAACAACTTGCAAGTTTTGCAGCTTTGCTATAATCAGTTGACAGGAAGCATACCTACCCAGCTTGGTTCTTTGAAGAAGCTGAGTGTTGTTGCGCTTCAGTCAAACCAGTTGACTGGTGCTATCCCTGCTAGTTTAGGTGACTTGCCTATACTGATGAGGCTTGATTTGAGTTCTAACAAACTCTTCGGTTCCATTCCCACTAGCCTTGCTGATGCTCCTTCACTCAAAGTTCTTGATCTTCACAACAATACTCTTTCTGGGAATGTGCCTCCTGCTCTGAAGAGACTTGATCATGGATTTCTATATGAAGACAATCTGGGGCTATGTGGACTTGACTTTCCATCCCTTAAGGCTTGCCTTTCTTTAAATCGCAGGCCTGAACCTTATGGAGCAGCAACAAGAGATATCCCAGAAACTGCAAATGTGAAGTTACCTTGCAATGGAAGCCAGTGCCTAAACTCTCCAAAATCAAAACAAGTACCATCCATTACCATTGGCATAGTCGTCATTGTGATTGCAGTGTCAGCAATTGGTCTCTTTGCCTTCACATTATTTCGCAGGCGAAAACAGAAGCTAGGAAACTCTTTTCATGTCTCTGATGGCCGGCCAAGTATCGACGAATCCAGGAGTATATACAGGAAAAGTGGATCTCCTTTGGCGAGCCTCGAGTACTCTACTGGATGGGACCCTTTAGCTGATAGTAGAAGCTTCAATGGTGTGGAAAATGAAGACTACAAGTTCCAGAGTTTCAGGTTCAACTTGGAAGAAATCGAGTCTGCGACTCAGTATTTCTCAGAGATGAATCTGTTGGGAAAGAGTAGCTTCAGTGCAACATATAAAGGAGTTCTAAGAGATGGTTCAGTTGTTGCTGTGAAGAGTATCAGCAAAACTAGCTGCAAGTCAGATGAAGGTGAATTCTTGAAGGGATTGAGCATTTTGACATCTCTGAGGAATGATAATTTGGTGAAGCTGAGAGGGTTTTGTTGTTCAAGTGGAAGAGGTGAATGCTTCTTGGTTTATGACTTTGTTTCCAACGGAAATCTTTCACGGTTTCTTGATGTGAAGGAAGGAGATGGAGAAGTTCTTGAATGGTCAACCAGAGTTTCTATTGTGAAAGGGATTGTTAAAGGTGTAGCATATTTACATGCACACAAGGTAAAGAAACCGGTTCTTGTTCACCAAAACATCTCGGCCGAGAAAGTGCTCGTCGATCACAGGTATAACCCAATGCTGGCAGATTCCGGCCTTCACAAGCTTCTTACCAATGACATTGTCTTCTCTGAACTCAAGGCCAGTGCAGCAAAGGGTTACCTTGCTCCTGAGTATGCCACCACCGGCCGGTTCACCCAGACCAGCGATGTTTATGCTTTTGGGGTGCTCCTATTGCAGATCCTCTCCGGGAAGCAGCAGATCAGTAACTCAATCAGGCTCGCCGCGGAAGCATCAAGATTCCAAGAATTCATTGATCCAAATCTCCATGGGAGATTCTTTGAATACGAAGCGACTAAACTGGCGAAAATCGCTTTGCTTTGCTGCAGTGAGTCTCCTTTTGAGAGGCCATCTATGGAAGCCATTGTTCAAGAACTGGGAAATTGTAGTAGCTGTATCTGA 2055 0.4389 MSFSSLLLPLFFTLMILFLLNPTMVYGNNEEEEEELLALMDMKDSMDPYGHYLTSWTINGNPCDGASFEGVACNEKGQVANISLQGKGLSGKLSPAIGGLKHLTGLYLHYNSLYGEIPREIANLTQLSDLYLNVNHLSGKIPTEIANMNNLQVLQLCYNQLTGSIPTQLGSLKKLSVVALQSNQLTGAIPASLGDLPILMRLDLSSNKLFGSIPTSLADAPSLKVLDLHNNTLSGNVPPALKRLDHGFLYEDNLGLCGLDFPSLKACLSLNRRPEPYGAATRDIPETANVKLPCNGSQCLNSPKSKQVPSITIGIVVIVIAVSAIGLFAFTLFRRRKQKLGNSFHVSDGRPSIDESRSIYRKSGSPLASLEYSTGWDPLADSRSFNGVENEDYKFQSFRFNLEEIESATQYFSEMNLLGKSSFSATYKGVLRDGSVVAVKSISKTSCKSDEGEFLKGLSILTSLRNDNLVKLRGFCCSSGRGECFLVYDFVSNGNLSRFLDVKEGDGEVLEWSTRVSIVKGIVKGVAYLHAHKVKKPVLVHQNISAEKVLVDHRYNPMLADSGLHKLLTNDIVFSELKASAAKGYLAPEYATTGRFTQTSDVYAFGVLLLQILSGKQQISNSIRLAAEASRFQEFIDPNLHGRFFEYEATKLAKIALLCCSESPFERPSMEAIVQELGNCSSCI* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g1924 684 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 5 682 - -
Ahy19g1924 684 Pfam Leucine rich repeat 174 233 IPR001611 GO:0005515
Ahy19g1924 684 SUPERFAMILY L domain-like 35 243 - -
Ahy19g1924 684 Gene3D Ribonuclease Inhibitor 31 189 IPR032675 -
Ahy19g1924 684 Pfam Protein tyrosine and serine/threonine kinase 416 677 IPR001245 GO:0004672|GO:0006468
Ahy19g1924 684 Gene3D Phosphorylase Kinase; domain 1 380 490 - -
Ahy19g1924 684 Pfam Leucine rich repeat N-terminal domain 33 74 IPR013210 -
Ahy19g1924 684 CDD STKc_IRAK 418 677 - -
Ahy19g1924 684 Gene3D Ribonuclease Inhibitor 190 248 IPR032675 -
Ahy19g1924 684 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 5 682 - -
Ahy19g1924 684 Gene3D Transferase(Phosphotransferase) domain 1 491 683 - -
Ahy19g1924 684 SUPERFAMILY Protein kinase-like (PK-like) 395 677 IPR011009 -
Ahy19g1924 684 ProSiteProfiles Protein kinase domain profile. 412 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g1924 Ahy-Chr19 111429366 111432652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g1924 7 525 Miscellaneous Gene Families AT4G22730 53.704 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Ahy19g1924 PK_Tyr_Ser-Thr 6.10E-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g1924 - - gmx:100775422 1050.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g1924 19 111429366 111432652 Ahy9g1561 9 84272934 84276163 hybridization
Ahy15g3388 15 156368252 156372276 Ahy19g1924 19 111429366 111432652 PCT
Ahy5g1898 5 87242203 87246208 Ahy19g1924 19 111429366 111432652 PCT
Ahy19g1924 19 111429366 111432652 Ahy15g3388 15 156368252 156372276 PCT
Ahy19g1924 19 111429366 111432652 Ahy5g1898 5 87242203 87246208 PCT