Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g1898 ATGCCTACCATGAAGAAGAATTCTGAACAAACATCTTTTGGGTTAGTATTTAGCAAATTGGCAGAGGAGATTGGTGAACCTGTCGACTTTGAACTTCCAGAATGGTTTAATAAGTGCAAGCCAATGCCAGTAACATTTATAAAACGCAATATATATCTGACAAAAAGGGTTAAAAGAAGGCTTGATGACGATGGCATATTTTGTTCTTGTACATCATCACCTGGATCTTCTGCTGTATGCGGTAAAGATTGCCACTGTGGGATGCTTCTGTCTAGCTGCTCTTCAGGCTGTAAATGTGGGGTTTCCTGTCTTAACAAACCATTCCAGCATCGACCCATCAAAAAGATGAAATTAGTTCAGACTGAGAAATGTGGTTCTGGAATTGTGGCGGATGAAGATATCAAGCAAGGAGAATTTGTGATAGAATATGTTGGAGAAGTCATTGATGACAAAACATGTGAAGAAAGATTATGGAACATGAAACTTCGTGGGGTGACAAACTTCTACCTATGTGAAATAAATCGAGATATGGTGATCGATGCAACATATAAAGGAAACAAATCAAGATATATCAATCATAGTTGCTGTCCTAATACTGAGATGCAGAAATGGATAATTGACGGTGAAACGAGAATTGGCATATTCGCAACGCGCGACATAAGGAAAGGCGAACATCTGACATATGATTATCAGTTTGTCCAGTTTGGTGCGGATCAGGATTGCCACTGCGGGGCTAATATGTGCAGGCGTAAGCTTGGTGTGAAACCTACCAAGCCTAAAACTTCTTCAGATGCTGCATTAAATTTATTCGGAGACCAGGTTTATCAGAATGGAGGTTTGCATATTGGAAATTCCCGCCTCTTTTGCCAATCAAACTGCCTTCGCAATTGCATTGGTGAAGTTGTTAGAATCAGACACCTTGATATTATAAGGTTCGGGATTATTAAGCGGTTTCATGAATATTCGAAGAAACACTCGATCATGTTTGAGGATGGACATGTTGAATTTTTTGACATGTCCAAGGAAGATTGGGAACTGGTTACATTGTGA 1050 0.3962 MPTMKKNSEQTSFGLVFSKLAEEIGEPVDFELPEWFNKCKPMPVTFIKRNIYLTKRVKRRLDDDGIFCSCTSSPGSSAVCGKDCHCGMLLSSCSSGCKCGVSCLNKPFQHRPIKKMKLVQTEKCGSGIVADEDIKQGEFVIEYVGEVIDDKTCEERLWNMKLRGVTNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIRKGEHLTYDYQFVQFGADQDCHCGANMCRRKLGVKPTKPKTSSDAALNLFGDQVYQNGGLHIGNSRLFCQSNCLRNCIGEVVRIRHLDIIRFGIIKRFHEYSKKHSIMFEDGHVEFFDMSKEDWELVTL* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g1898 349 SMART shorttest3 63 113 IPR006560 GO:0005634|GO:0018024
Ahy19g1898 349 PANTHER SET DOMAIN PROTEINS 11 346 - -
Ahy19g1898 349 ProSiteProfiles AWS domain profile. 63 112 IPR006560 GO:0005634|GO:0018024
Ahy19g1898 349 SUPERFAMILY SET domain 27 243 IPR046341 -
Ahy19g1898 349 Gene3D SET domain 33 268 IPR046341 -
Ahy19g1898 349 Pfam SET domain 125 230 IPR001214 GO:0005515
Ahy19g1898 349 ProSiteProfiles SET domain profile. 114 231 IPR001214 GO:0005515
Ahy19g1898 349 ProSiteProfiles Post-SET domain profile. 237 253 IPR003616 -
Ahy19g1898 349 SMART set_7 114 237 IPR001214 GO:0005515
Ahy19g1898 349 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 11 346 - -
Ahy19g1898 349 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 37 308 IPR025787 -
Ahy19g1898 349 CDD SET_ASHR3-like 115 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g1898 Ahy-Chr19 109556211 109562705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g1898 87 249 C2H2 Transcription Factor Family AT2G23740 34.426 1.13e-21 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Ahy19g1898 SET 2.40E-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g1898 - - gmx:100808183 605.905