Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g1892 ATGGAGCCTAATAACTACAATTCTTGTTCTAATGTTGTTGTCACTGATGATGAGAAGAAGCCATTATTAGAAGAGAAAAAGATGGGTACAATAATAAGATACAAAGAATGTCTGAAGAACCATGCAGCTTCACTTGGTGGCAATGCAACTGATGGATGCGGCGAATTCATGCCCTGTGGTCAACAAGGTACCATTGAAGCCCTCATCTGTTCTGCATGCAATTGCCATAGAAACTTTCACAGGAAAGAGATTCAATCTGAAGCTCATCATCATCAACATCAAGTGGTGAAGCATATTTTTGCACACTCATCAATTAGTCTTTCTGATCAATCTTATGATCATGATCATAACGACAATAAGGATTATTGTGAAAAAGGGGGGGTGCGGATGAAGAAGAGGTTCAGAACAAAGTTCACACAAGAACAGAAGGCGAAGATGCTCGATTTCGCGGAGAAGGCCGGATGGAAGATACAGAAGCTAGATGAATCTATGGTGAACAAGTTTTGCCAAGACCTTGGGATCAAGAGAAGGGTACTCAAGGTTTGGATGCACAATAACAAGAACACTTTTGCTGCGAAGAATAAGAAGAATCTTTCTACAACCACCTAG 609 0.4056 MEPNNYNSCSNVVVTDDEKKPLLEEKKMGTIIRYKECLKNHAASLGGNATDGCGEFMPCGQQGTIEALICSACNCHRNFHRKEIQSEAHHHQHQVVKHIFAHSSISLSDQSYDHDHNDNKDYCEKGGVRMKKRFRTKFTQEQKAKMLDFAEKAGWKIQKLDESMVNKFCQDLGIKRRVLKVWMHNNKNTFAAKNKKNLSTTT* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g1892 202 Pfam ZF-HD protein dimerisation region 32 84 IPR006456 -
Ahy19g1892 202 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 34 83 IPR006456 -
Ahy19g1892 202 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 131 188 IPR006455 -
Ahy19g1892 202 SUPERFAMILY Homeodomain-like 126 189 IPR009057 -
Ahy19g1892 202 Gene3D - 115 193 - -
Ahy19g1892 202 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 15 195 - -
Ahy19g1892 202 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 15 195 - -
Ahy19g1892 202 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 33 84 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g1892 Ahy-Chr19 109022927 109024067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g1892 30 198 ZF-HD Transcription Factor Family AT1G14440 52.000 1.18e-68 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Ahy19g1892 ZF-HD_dimer 5.50E-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g1892 19 109022927 109024067 Ahy9g1540 9 83163516 83164628 hybridization