LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy19g1888	ATGGCCACCAGGCGTTTGAGGGCATTCAAGCGATGGATGAGTTCCAATGGATTCGAATGGAGCAATGCGTTGGAGTTTGTTGACACCCCGGAAGAGGGAATATCTGTTAGAGCACTGTGCCAACTGAAGGAAGGTGATATTGTGGCTAAGATGCCGAAGGAGGCATGCCTCACTGTAAGGACTAGCGGTGCGCGCCAGATAATCGAAGATGCCGGTTTGGGCGGCTATTTGGGACTTGCAGTTGCCATCATGTATGAGAGGAGTTTGGGTGAAGAATCTCCTTGGGCAGGGTACCTTCAGGTCTTGCCCAAACAAGAGTGTGTGCCATTGGTTTGGACCCTCAATGAAGTCGATGAGCTTCTGCATGGAACCGAGCTTCATCAGACGGTACAAGAAGACAAAGCTCTTATCTGTGACGACTGGAAAGAAAATATTTTTCCCCTATTGGATTCAGTGCCTTCAAGGCTTAACCCAACATTTTTTGGTATAGAACAATATTTTGCTGCAAAAAGTCTTATTTCTTCACGGGGTTTCGAGATAGATGATTTCCATGGTTTTGGTATGGTTCCCCTGGCAGACCTATTCAATCATAAAACAGGGGCCGAGGATGTGCATTTCACCGCCTCATCTAATTCTGTAGCTGATGATGATGTCGATGATGATAATAGTAACAATGATGAGGGCATTGCTGATGAAGAAGCATTGGCTGAGAAATCTTCCACAGATACAACTGATCTGGATGCTACTCATGTTGAGAATGGCAATGCTAGTGACACAGACTGTTTGTCGGATACAGGAGATGACGATCCTTCAATGCTGGAAATGATTGTGGTAAAAGATGTCAGCAGTGGAGCAGAGGTGTTTAATACTTATGGGTTGATGGGTAATGCTGCATTGCTTCATAGATATGGATTTACTGAGCAAGATAATCCGTATGACATTGTTAACATTGATTTGGAAATGGTGATTCAATGGTGCTCTTGTTTGTTTTCTGATCGGCACAGTAGGTCAAGGGTCTCCCTATGGAGAAGGTTAGGCTATTCTGCATGCGGTGACCAAAACTCGGAATATTTCGAGATTTCATTTGAAGGAGAACCACAGACTGAACTCATGGTTTTGTTGTATGTCATGCTGTTGCCAGATAATGCATACCATATGTTGGACCTTTCGCTATCGGTTGCCAGATCTGGGCATGAATCAAGCGATGCTAATCTGTTGGATGATAACATATTTGCAATCAAATCATGTAATGTGAGCAAGAGATCTCTGCTGACAAAAAAAGTACGTGATGGTTTGTTAGCACTTGCAGACATGAGGGAGGGTCTCTATGGTTTGGAACCAATAGAAGACGATATTGCGCGACTGGGAAAGTGTAGTTCGGTTAGAGAGAGGAAGTTGTATCATTCTTTGATGCTGCGCATGTGCGAAAGGAGGATCCTTCAGAGACTCAGACATTATGCTTCTGAGCCATTTGAAATCAATAATCATAGTTCTTCAAGGAAGAAGTTGAAGTCAACAAAGAGAAAAAGATAA	1533	0.4357	MATRRLRAFKRWMSSNGFEWSNALEFVDTPEEGISVRALCQLKEGDIVAKMPKEACLTVRTSGARQIIEDAGLGGYLGLAVAIMYERSLGEESPWAGYLQVLPKQECVPLVWTLNEVDELLHGTELHQTVQEDKALICDDWKENIFPLLDSVPSRLNPTFFGIEQYFAAKSLISSRGFEIDDFHGFGMVPLADLFNHKTGAEDVHFTASSNSVADDDVDDDNSNNDEGIADEEALAEKSSTDTTDLDATHVENGNASDTDCLSDTGDDDPSMLEMIVVKDVSSGAEVFNTYGLMGNAALLHRYGFTEQDNPYDIVNIDLEMVIQWCSCLFSDRHSRSRVSLWRRLGYSACGDQNSEYFEISFEGEPQTELMVLLYVMLLPDNAYHMLDLSLSVARSGHESSDANLLDDNIFAIKSCNVSKRSLLTKKVRDGLLALADMREGLYGLEPIEDDIARLGKCSSVRERKLYHSLMLRMCERRILQRLRHYASEPFEINNHSSSRKKLKSTKRKR*	511

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Ahy19g1888	510	PANTHER	UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE	5	488	-	-
Ahy19g1888	510	SUPERFAMILY	SET domain	4	211	IPR046341	-
Ahy19g1888	510	Gene3D	set domain protein methyltransferase, domain 1	2	305	-	-
Ahy19g1888	510	MobiDBLite	consensus disorder prediction	214	230	-	-
Ahy19g1888	510	PIRSF	RMS1_SET	1	490	IPR011383	GO:0016279\|GO:0018026
Ahy19g1888	510	MobiDBLite	consensus disorder prediction	231	245	-	-
Ahy19g1888	510	MobiDBLite	consensus disorder prediction	210	265	-	-
Ahy19g1888	510	SUPERFAMILY	SET domain	269	310	IPR046341	-
Ahy19g1888	510	MobiDBLite	consensus disorder prediction	246	261	-	-
Ahy19g1888	510	Pfam	SET domain	33	292	IPR001214	GO:0005515

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy19g1888	Ahy-Chr19	107933991	107937220	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy19g1888	1	504	NAC Transcription Factor Family	AT3G56570	53.846	0.0	525

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Ahy19g1888		SET	2.40E-07	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy19g1888	K05302		-	gmx:100794971	704.131

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy19g1888	19	107933991	107937220	Ahy9g1525	9	81410915	81414877	hybridization

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