Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g1888 ATGGCCACCAGGCGTTTGAGGGCATTCAAGCGATGGATGAGTTCCAATGGATTCGAATGGAGCAATGCGTTGGAGTTTGTTGACACCCCGGAAGAGGGAATATCTGTTAGAGCACTGTGCCAACTGAAGGAAGGTGATATTGTGGCTAAGATGCCGAAGGAGGCATGCCTCACTGTAAGGACTAGCGGTGCGCGCCAGATAATCGAAGATGCCGGTTTGGGCGGCTATTTGGGACTTGCAGTTGCCATCATGTATGAGAGGAGTTTGGGTGAAGAATCTCCTTGGGCAGGGTACCTTCAGGTCTTGCCCAAACAAGAGTGTGTGCCATTGGTTTGGACCCTCAATGAAGTCGATGAGCTTCTGCATGGAACCGAGCTTCATCAGACGGTACAAGAAGACAAAGCTCTTATCTGTGACGACTGGAAAGAAAATATTTTTCCCCTATTGGATTCAGTGCCTTCAAGGCTTAACCCAACATTTTTTGGTATAGAACAATATTTTGCTGCAAAAAGTCTTATTTCTTCACGGGGTTTCGAGATAGATGATTTCCATGGTTTTGGTATGGTTCCCCTGGCAGACCTATTCAATCATAAAACAGGGGCCGAGGATGTGCATTTCACCGCCTCATCTAATTCTGTAGCTGATGATGATGTCGATGATGATAATAGTAACAATGATGAGGGCATTGCTGATGAAGAAGCATTGGCTGAGAAATCTTCCACAGATACAACTGATCTGGATGCTACTCATGTTGAGAATGGCAATGCTAGTGACACAGACTGTTTGTCGGATACAGGAGATGACGATCCTTCAATGCTGGAAATGATTGTGGTAAAAGATGTCAGCAGTGGAGCAGAGGTGTTTAATACTTATGGGTTGATGGGTAATGCTGCATTGCTTCATAGATATGGATTTACTGAGCAAGATAATCCGTATGACATTGTTAACATTGATTTGGAAATGGTGATTCAATGGTGCTCTTGTTTGTTTTCTGATCGGCACAGTAGGTCAAGGGTCTCCCTATGGAGAAGGTTAGGCTATTCTGCATGCGGTGACCAAAACTCGGAATATTTCGAGATTTCATTTGAAGGAGAACCACAGACTGAACTCATGGTTTTGTTGTATGTCATGCTGTTGCCAGATAATGCATACCATATGTTGGACCTTTCGCTATCGGTTGCCAGATCTGGGCATGAATCAAGCGATGCTAATCTGTTGGATGATAACATATTTGCAATCAAATCATGTAATGTGAGCAAGAGATCTCTGCTGACAAAAAAAGTACGTGATGGTTTGTTAGCACTTGCAGACATGAGGGAGGGTCTCTATGGTTTGGAACCAATAGAAGACGATATTGCGCGACTGGGAAAGTGTAGTTCGGTTAGAGAGAGGAAGTTGTATCATTCTTTGATGCTGCGCATGTGCGAAAGGAGGATCCTTCAGAGACTCAGACATTATGCTTCTGAGCCATTTGAAATCAATAATCATAGTTCTTCAAGGAAGAAGTTGAAGTCAACAAAGAGAAAAAGATAA 1533 0.4357 MATRRLRAFKRWMSSNGFEWSNALEFVDTPEEGISVRALCQLKEGDIVAKMPKEACLTVRTSGARQIIEDAGLGGYLGLAVAIMYERSLGEESPWAGYLQVLPKQECVPLVWTLNEVDELLHGTELHQTVQEDKALICDDWKENIFPLLDSVPSRLNPTFFGIEQYFAAKSLISSRGFEIDDFHGFGMVPLADLFNHKTGAEDVHFTASSNSVADDDVDDDNSNNDEGIADEEALAEKSSTDTTDLDATHVENGNASDTDCLSDTGDDDPSMLEMIVVKDVSSGAEVFNTYGLMGNAALLHRYGFTEQDNPYDIVNIDLEMVIQWCSCLFSDRHSRSRVSLWRRLGYSACGDQNSEYFEISFEGEPQTELMVLLYVMLLPDNAYHMLDLSLSVARSGHESSDANLLDDNIFAIKSCNVSKRSLLTKKVRDGLLALADMREGLYGLEPIEDDIARLGKCSSVRERKLYHSLMLRMCERRILQRLRHYASEPFEINNHSSSRKKLKSTKRKR* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g1888 510 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 5 488 - -
Ahy19g1888 510 SUPERFAMILY SET domain 4 211 IPR046341 -
Ahy19g1888 510 Gene3D set domain protein methyltransferase, domain 1 2 305 - -
Ahy19g1888 510 MobiDBLite consensus disorder prediction 214 230 - -
Ahy19g1888 510 PIRSF RMS1_SET 1 490 IPR011383 GO:0016279|GO:0018026
Ahy19g1888 510 MobiDBLite consensus disorder prediction 231 245 - -
Ahy19g1888 510 MobiDBLite consensus disorder prediction 210 265 - -
Ahy19g1888 510 SUPERFAMILY SET domain 269 310 IPR046341 -
Ahy19g1888 510 MobiDBLite consensus disorder prediction 246 261 - -
Ahy19g1888 510 Pfam SET domain 33 292 IPR001214 GO:0005515
Ahy19g1888 510 CDD SET_LSMT 23 306 - -
Ahy19g1888 510 ProSiteProfiles SET domain profile. 22 292 IPR001214 GO:0005515
Ahy19g1888 510 PANTHER RIBOSOMAL LYSINE N-METHYLTRANSFERASE 3 5 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g1888 Ahy-Chr19 107933991 107937220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g1888 1 504 NAC Transcription Factor Family AT3G56570 53.846 0.0 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Ahy19g1888 SET 2.40E-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g1888 K05302 - gmx:100794971 704.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g1888 19 107933991 107937220 Ahy9g1525 9 81410915 81414877 hybridization